MmuEX6100214 @ mm10
Exon Skipping
Gene
ENSMUSG00000039660 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30174922-30175812:-
Coord C1 exon
chr2:30175714-30175812
Coord A exon
chr2:30175187-30175260
Coord C2 exon
chr2:30174922-30175069
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTGCTGAGGCTCCCTTCCAGGAT
3' ss Score
4.71
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AATGCAAGACATACAAAGGAACAGTTGTGTCATCACAGGACCCCCGCACCAAAGCTGGTCTCTACTGGGGCTACACTGTCCGGCTGGCCTCTTGCCTCA
Seq A exon
GATGGGTACGACCTGACCATTGGGACATCAGAACGTGGCTCCGACGTGGCCTCTGCCCAGCTGCCCAGCTTCAG
Seq C2 exon
GCATGCCCTTGTGGTGTTTGGAGGCCTCCAAGGGCTAGAAGCTGCAGTGGATGCTGACCCGAACCTTGAAGTGGCTGACCCCAGTGTCCTCTTCGACTTCTATGTCAACACATGCCTTAGCCAGGGCAGCCGTACCATCCGCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660-'17-19,'17-18,18-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTCTACTGGGGCTACAC
R:
CCTGGCTAAGGCATGTGTTGA
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types