DreEX0001418 @ danRer10
Exon Skipping
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3656128-3657146:+
Coord C1 exon
chr21:3656128-3656226
Coord A exon
chr21:3656497-3656924
Coord C2 exon
chr21:3656999-3657146
Length
428 bp
Sequences
Splice sites
3' ss Seq
ATGTGTATGTTTGCTTATAGTTT
3' ss Score
6.51
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATGGAAGAGTGTATAAAGGTGTGGTTGTTGCTCCTCACATCCCCAGGACTGAAGCTGGACTCTACTGGGGATACAGCGTCCGACTGGCCTCCTGTCTCA
Seq A exon
TTTGTGTGTCTGCATTGTGCTTGTGTGTGTTTGTTGTTTGTTAGTGTGTGTGGCTTGTTTTATTGTATGTGTATGTGCATGTATATGGATTTTTATTGTGTGTGTGTTTGCTTATTGTTTGTGCGTCTGTGTATTGTGCAAATATGTGTATAGTGTTTATTGTTTGTGTGTGTGTCTTATTTTTGTGTTTGTTTGTTTGTGTGTATTGTGTGACTTTATTGTGTTTTTTTTTTTCATTGCCTTATTTTGTTGTGTCTTTTGTTTGTTCGTTTGTGTATGTCACTGTTTTGCACATCTTTATTGTGTGTTTATTGTGCGTGTGTAGGCGCTGTGTTCTCTGAGTGTCCGTATAAAGAGGGTTATGATCTGACCATCGGGACCTCAGAGAAAGGACAGAACACAGATCATGTGACTCTCCCAGCCTTCAG
Seq C2 exon
GCACATGCTGGTGGTGTTTGGAGGTCTGCAGGGTTTAGAGGCCAGCGTTGATGCGGATGAGAATCTGACCATCAGTGACCCCAGCGTGCTTTTTGACCTTTACCTCAACACATGTCCAGCACAGGGCAGCCGCACCATCCGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707-'12-18,'12-16,14-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=PD(17.9=94.7)
A:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGTGTATAAAGGTGTGGT
R:
CTCTGTGCGGATGGTGCG
Band lengths:
246-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]