RnoEX6016278 @ rn6
Exon Skipping
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8745389-8746337:-
Coord C1 exon
chr3:8746239-8746337
Coord A exon
chr3:8745654-8745756
Coord C2 exon
chr3:8745389-8745536
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTGAGTCTGCCCACCCCCAGGTG
3' ss Score
8.5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AATGCAAGACGTACAAAGGAACAGTCGTGTCGTCACAGGACCCCCGCACCAAAGCTGGTCTCTACTGGGGCTACACTGTCCGGCTGGCCTCCTGCCTCA
Seq A exon
GTGCTGTGTTTGCCGAGGCTCCCTTCCAGGATGGGTATGACCTGACCATTGGGACATCAGAACGTGGCTCCAGCGTGGCCTCTACCCAGCTGCCCAACTTCAG
Seq C2 exon
GCATGCTCTTGTGGTGTTCGGAGGCCTCCAAGGGCTAGAAGCTGGAGTGGATGCTGACCCGAACCTTGAAGTGGCTGACCCCAGTGTCCTCTTCGACTTTTATGTCAACACATGCCCTAGCCAGGGCAGTCGTACCATCCGCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.3=100)
A:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGACGTACAAAGGAACAGT
R:
GGTGCGGATGGTACGACTG
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]