MmuINT1009580 @ mm10
Intron Retention
Gene
ENSMUSG00000015337 | Endog
Description
endonuclease G [Source:MGI Symbol;Acc:MGI:1261433]
Coordinates
chr2:30172842-30174069:+
Coord C1 exon
chr2:30172842-30172951
Coord A exon
chr2:30172952-30173690
Coord C2 exon
chr2:30173691-30174069
Length
739 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCGCCCGGGTCTATCCACAGGAC
3' ss Score
8.46
Exon sequences
Seq C1 exon
GTGCCACACCTCAACCAGAATGCCTGGAACAACCTTGAGAGGTACAGCCGCAGCTTGACGCGAACTTACCAAAATGTCTATGTCTGCACGGGGCCGCTTTTCCTGCCCAG
Seq A exon
GTAAGCCTGTAGCTGACGGGGCCTCCGACTCCTGTTCTCCAACCTTGGGCTTTCTGTGTCACTGTAGCCAGAGACCTTTGGGTGGCCTAGAACTCTGCTGTGCCCTCAGGTGCCTGGCCCCACACCTGCCTTTGCTCCCCACGTCTGACCTGCCTTACCACCTGTAACCCGTGGCTGCACGGGAGGCTGTCACCCTTGCCTCTGACGTGCTAAGGATTCCTGGCAGACAAATGAGCTGAGCTCCTCGGGAGGGCACAGAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACGGGCTGCAGCACGGGCTGCAGGAGGCAGCGGCTGCTGCGGAAACCAGAAGCTACAGGCATCCACTACAGGCCATCTGGCGTGGCGCGGTGTGACGCCACCCGAGCACCAGGCTGGGGCTGGGGTTCCCCAGCATGGCCTCCCACTCGTGCTTGTTAGGTGTACTGCCTACGGGACAGGTTACAGTCACGTGAGCATAGGTGAGCATCAGGGTCTAGAGAGCTCATTCCTCTAGCTGCGTTTATTGCCTCCCATTCTGTCTGAAGCAGTATTGGGCAGAAAAGCAGAGGTTAAGCATTGGTCCCCACCTTACATAGTTCCCAGACCCAAGGAGGCACCAGGCCCAGCACAAACTTCTTGCTTGTTGGAAGTTAGGAAGGCTTCCTGGAAGAGGTGACCTTGTATGTAACCAGGCCTCTTGGCCATGCGCCCGGGTCTATCCACAG
Seq C2 exon
GACCGAGGCTGATGGGAAGTCCTATGTGAAGTACCAGGTTATTGGGAAGAACCACGTGGCAGTGCCCACACACTTCTTCAAGGTGCTGATCCTGGAGGCAGCCGGTGGGCAGATCGAGCTACGTTCCTACGTGATGCCCAATGCCCCCGTGGATGAGACCATCCCTCTGGAGCGGTTCCTGGTGCCCATCGAGAGCATCGAGCGGGCCTCGGGATTGCTCTTCGTGCCCAATATTCTGGCTCGAGCTGGAAACCTCAAGGCTATCACTGCTGGCAGCAAGTGATGGTGGAGGACTCACTGGAGCCCCTGGGGAGATGGGCTGACTCACATTAAAGGCAGTTATTTTTGGAGAGAAGACTTGACCATCTCTACTCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015337:ENSMUST00000015481:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0122318=Endonuclease_NS=FE(17.2=100)
A:
NA
C2:
PF0122318=Endonuclease_NS=PD(38.8=85.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTGACGCGAACTTACCA
R:
GTCCTCCACCATCACTTGCTG
Band lengths:
354-1093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types