DreINT0063004 @ danRer10
Intron Retention
Gene
ENSDARG00000058865 | endog
Description
endonuclease G [Source:ZFIN;Acc:ZDB-GENE-050522-402]
Coordinates
chr8:12082275-12084523:+
Coord C1 exon
chr8:12082275-12082384
Coord A exon
chr8:12082385-12083934
Coord C2 exon
chr8:12083935-12084523
Length
1550 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAA
5' ss Score
6.53
3' ss Seq
TTTTTTCTCTGCACCTACAGACA
3' ss Score
9.05
Exon sequences
Seq C1 exon
AATCCTAATCTTAACCAGAATGCCTGGAATAACTTGGAGAAGTATTGTCGCTCTCTCACCAAGCATTACCAGAATGTCTTTGTATGCACTGGACCACTCTACTTACCACG
Seq A exon
GTAAAACTGTTCTAGTGTGCTCTACAATATGCACTGCCTGCATGTTACATCATTAAAGAAGAAAAAAGCGTTAAGGGCATGTCCGAATCCATTTTTGCTATTTTAAGGATGGAAAAATCCGTTCTGCGCTCTGGCACATGGTCTAACAGGGTTGAGCTTATTCTCTTAATGAGTTATGGCTGTGTTTTGAATATAACATGCATTAAACCAATCCGAGTCTCATCTCCCATTCCCTTTAAGAGTCAGCTGGGTCACATCATGTTGTATTTGCTATTTACTCAACATGGCGGACTTTGTAAGTGGAAAAAATGAATGCTTCACTAGTGAGAAGACAGTTAAACAGACCATCTGCAGCGCGAGGATAAAGAATGAGCCTCTTTACCTTTCTCTTTTACTCTTTACTTTACTCTTTTACTTTAGTGGATAAGTAAATGGTGTTGTATGGAAGGCATTCATTAGCTTACATATTTAATGTCATTTGTTAGGCACAACGATTTGTTTCAAATCTATTTCTAAATTCAGTTCTAATTTCCAGCAAACAAATAAATGAAAATTTATTATAAATTATATTATAATATTATAAGAGTTATATCCAAACACAGTTGTATTCTTATGCCCCATACATCTCCAAAAGCCCAACAGGTGGACAAATCTAAACTTTTTTTTATAAAAAAAAATATAAATATGCATATAATAAATAACAGTGCTAAAAATAATAATCAATAACAACATTATACGAATGCAAATTGTCACGAGTAAGCGAGGCATGGAGGTAGTAGTTTTTAGATTTATGTTGAAAATAATAATTGTAACATTTTAATACTTAAATTTTTTTCATATGTAAAAATATTTGTCTATTGTTTTACATCACGTGTGTATTAAGCAATGTCTAAGCGTTTGGACCCACACAGGCGCATAACTAACGCGCTCTGCACGTCACTTTAGACCAAATTTCAGTTGGTCAATAGCGCAGTCTATTTCAGTACCTCAAAACGGCAACAATGTGCCTTAACACACCTCTTTTTTAGACCACCATGCCCATGAGTCCACAAAGTGGCTTAAAATCTGAAATCTGATCTGATGGCAACAAATTATGTCAAACACGTCTTGTGCCTTATTGCAGCAGGTGTATAATAGGGCCCTTTGTCAATAAACAAAGGGCGCCAATGTGTTGTGTACATCAATGTGCAAAACGGTAGCTGTAAAACAATCATTAAAGAAACTGTTTCATGCTAGTTTTTTTTGATGGACCACTTTAAAAACTGATCCACCAATGAGACTGGCACTTTTGTTCATGTGCCAGGAGCTGGTAAATTTACAGTAAACACCACTTAGAGGCCGAGTCGAGTCAAGCAGAGTTTCACTTTCAGTGTAAAGCGTCCTGGTGTGTTTGAGCCTGAAGTCTACCGTTACTTCCAGTTCACAAGAACCTTATATTAGAAGTTCTAGATATTTCAAAATAGCAAATGCATCTCAAAACTCAAGATCTTAAAACATTTGAAAATCTTTGAGGGATGAAAAGTGAAATCTTTTTTTCTCTGCACCTACAG
Seq C2 exon
ACAGGAAGCTGATGGGAAGATGTACGTGAAATATCAGGTTTTGGGAAAGAATCATGTAGCGGTGCCGACTCACTTCTTTAAGGTGGTGATTCTGGAGAAGCCGAGAGGAGATGTGGAGCTGCGCTCCTATGTGATGCCCAACATGCCGGTCGATGAGAAGATTCCACTGGAGCGCTTCCTGGTTCCTATTGAGAGCATTGAGAGAGCGTCAGGACTGCTGTTCGTACCAAACATCATGAAGAGGACCAGCAGTCTGAAAGCCATAACAGCAGGATGAGTTTACAGTCAATGCTGAGGGCGAAAGTAAAATCCATCAAAAATTCATAACAAAAGTTTTAAGGAAAACTACTGAGAAAACACATAGAAGTCAATGTATAGTGATAATGACTGTCATATCACTGTCTGATGTTGTATTGTTTAGTAGAGATTTTGTATTATTACTGTTGTTAGATGTCAGCCATTAACAGGGATTTTATAATATAACAATTAATTTATGCCGAGCCAAAACTGTACAGAAGTAGATTTTAATACAGATAGTGATATTTGAATCTGTACTACTAGAAATAAAAACTGTGCAATCTTTAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058865:ENSDART00000081819:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0122318=Endonuclease_NS=FE(17.3=100)
A:
NA
C2:
PF0122318=Endonuclease_NS=PD(38.5=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCTCTCTCACCAAGCATT
R:
ACTCATCCTGCTGTTATGGCT
Band lengths:
343-1893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]