DreEX6082806 @ danRer10
Exon Skipping
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3647825-3650462:+
Coord C1 exon
chr21:3647825-3647914
Coord A exon
chr21:3650186-3650235
Coord C2 exon
chr21:3650332-3650462
Length
50 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGTATTGTGTGCAGATA
3' ss Score
7.91
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GAGCGTTGAAGGAGAGTTTAAAGGTGTGGGTAAGAAAGGCCAGTCCTGTGTCCAGCTGGCACGCATCCTGCAGTACCTCGAGTGTCCACA
Seq A exon
ATATCTACGGAAATTCTTCTTCCCGAAGCATCAGGATCTGCAGTTTGCTG
Seq C2 exon
GTCTGTTGAATCCTCTGGACAGCCCTCATCACATGCGCATTGATGAAGAGGCGGAGTTTCGAGAGGGCGTGGTTCTTGATCGGCCAGTCAAAGCAGGAAAAGGCTCCTTTGTCAACTGCGGCATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707-'7-11,'7-10,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(12.1=100),PF0259812=Methyltrn_RNA_3=FE(6.1=100)
A:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
C2:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGGGTAAGAAAGGCCAG
R:
TCTCGAAACTCCGCCTCTTCA
Band lengths:
132-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]