DreINT0003301 @ danRer10
Intron Retention
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3650186-3650462:+
Coord C1 exon
chr21:3650186-3650235
Coord A exon
chr21:3650236-3650331
Coord C2 exon
chr21:3650332-3650462
Length
96 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGTGTGAATGTGTTTTAAAGGTC
3' ss Score
8.17
Exon sequences
Seq C1 exon
ATATCTACGGAAATTCTTCTTCCCGAAGCATCAGGATCTGCAGTTTGCTG
Seq A exon
GTGAGCAACACACAAAAAATAACAATGATTCTTCTTTAAAGGTGATTGTAGTGTGCATTCGGTTGAACTGTGTGTGTGTGTGAATGTGTTTTAAAG
Seq C2 exon
GTCTGTTGAATCCTCTGGACAGCCCTCATCACATGCGCATTGATGAAGAGGCGGAGTTTCGAGAGGGCGTGGTTCTTGATCGGCCAGTCAAAGCAGGAAAAGGCTCCTTTGTCAACTGCGGCATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707:ENSDART00000146754:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(5.8=100)
A:
NA
C2:
PF0259812=Methyltrn_RNA_3=FE(14.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAAATTCTTCTTCCCGAA
R:
ATGCCGCAGTTGACAAAGGAG
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]