DreINT0003599 @ danRer10
Intron Retention
Gene
ENSDARG00000093198 | C3 (8 of 8)
Description
complement component 3 [Source:HGNC Symbol;Acc:HGNC:1318]
Coordinates
chr1:55352085-55352477:-
Coord C1 exon
chr1:55352390-55352477
Coord A exon
chr1:55352191-55352389
Coord C2 exon
chr1:55352085-55352190
Length
199 bp
Sequences
Splice sites
5' ss Seq
CAAGTACTG
5' ss Score
0.23
3' ss Seq
GTTTTGTGTGTGTGGTGAAGGTA
3' ss Score
5.13
Exon sequences
Seq C1 exon
TCCTGCCCAGCTTCGAGGTGTCTTTAAGTCCACACAAAGCCTTCTTCTACGTGAACGATGACAGTCTCTTAGTCGACATCCACGCCAA
Seq A exon
GTACTGCACTCCTCTTGCACGATTTAGAAAATAAAAACAAAAACTAATGAAAAGAACTAAACCTGAACTGAAATTTAAAGCAAATGTAAATATTGTATAGAACAATATGGTGGCCTTGTTTATAACTAACAAATATATTGCTGCCGATCACATTATGTTATTGACTAATGTATATGTGTGTTTTGTGTGTGTGGTGAAG
Seq C2 exon
GTATTTGTTTGGCGAGACAGTCAATGGTCATGGGTTTGTTGTGTTTGGTGTGGTGACCGAAGATAAAGGGAAGATTAGCATCCCCGGCTCCTTACAGAGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000093198:ENSDART00000143793:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCCCAGCTTCGAGG
R:
CTGCACTCTCTGTAAGGAGCC
Band lengths:
194-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]