DreINT0005721 @ danRer10
Intron Retention
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6558940-6561865:-
Coord C1 exon
chr7:6561654-6561865
Coord A exon
chr7:6558980-6561653
Coord C2 exon
chr7:6558940-6558979
Length
2674 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
ACTGTCTTTATGCCTTTCAGAGA
3' ss Score
9.26
Exon sequences
Seq C1 exon
TTTCTAGGTCAGTCTGGTGTTCATCTGAAGCGGGATTTCTTCCTCACACACGCGTCCAGCGCTCGATCGGAGCTCTTCATTAACCTGCGGGAGGTGAGCTCCCGTTTCCGGCTGCCCGCGGGCGAGTACATCATCGTCCCGTCCACCTTCGAGCCAAACAAAGAGGCCGATTTCGTGCTCAGAGTTTTCTCAGAGAAGCCCGCCAACTCAGA
Seq A exon
GTAAGTCTGGGGTCACGAGGCTTAGGTCAGAGTAATTCGCCCTTTCTTATCTTTCAGATATTTCCCAAATGATGTTTAACAGTTTTAGGAAATTTTCACTGTATTTCCTATAATATTTTTCCTCTGAAGAAAGTTTTTTTTTTTTTTGGCTAGAATTAAAGCAGTTTTTAATTTTTTAAAAACCATTTAAGGTCAACATTATTAGCCTCCTTAAGAAATGTTTGTTTCAATTGTCTACACAACAAACCACTGTTACACAATGACTTGCCTAATTTCACAAACATTACCCTAATTAACCTAGTTAAGCCTTTATATGTCACTTTAAGCTGAATACTAGTATCTTGAAGAATATCTAATCAAATATTATGTGCGGTTATCATACAAAGATAAAATAAATCAGTTATTAGAGATGAGTTGTTAAAACTATCGTGTTTAGAAATGTGTCTCTCCGTTAAACAACAATTGGGGAAAGTAATATACAGGGGTTAATAATTCTGACTTCAACTGTATATTGTTGGATCTTTTGCTTTCATTCTGTATTGTTCTCTCAAAAGAAGATTTACTTCTGATTAGGGCTGGGTAAATAAACAAAAGGCTATTTTCTTGTGCATTATAGAGTATATAGCCATAATTAGAATTAATGCTGCTGCCAATTCTGATTGGTTAATTGAATTGTACTTCTATAGTGCTTGTGTCAATGCTGAAAAAGTAAACATTGATAAAGTGTGTGTGTATATATATATATATATATATGAGCAATATCACACGAGCAGCAGTGCAAAATGGCTGTATATCAGCACTGGTAGGAGGCGTGCATTGCCTTAGCGTCGCACCAGTGCTGAGATACAGCCATATCGCACTGTTACGAGTGTGATATTGTGTTTATATAAATATATCGTGTAAATAAAAAAGAAAATCAAACACGCAGAGTCTAAAACCCTTTTGTATTAGGAACTAATTTTTTCGGCCATGCATTTACATCCGCAGCTGACGTCAGAACAGTAGAAGCCGTTACTAATTCACCAACGTCACTTTAGTGTTTGAATGACTCTCTTTAGCGTACCCTGCTGAAAAATCCAGCTTAAACCAGCCTAGGCTGGTTTATGCTGGATTTTTCAGCAGGGTAATGTCCAAGGTGATGACAAAACAGCTGATATTGCTCACATTTTTGGATTATAAGGCTGAACGTGACATGAAATGCCATCCATTTACAGAGATATCTTCCTACAGTCTACAGTATTTCTCTGTTGCCGTCGGTATTGTGATGGGTGCCAGGTGTCCCAGTGTTTCCCCGGAGGCTTTAAGGAATAAAAATAGGAGACAGAAACTATTTTGCTCTTCCTATTAGCCTTTATACGTTTCTCCCAAGTGTTGTCGACTACATACATGCCAGTCAACGACAATGAGTAGGCAAAAGGAAAACAAAAAGACACTCGAATATGCGTCGCAAAATAAAATGTTACATCATTGAAATGAAAGTATGATAACTTACAGCGGTAGAGCGACCATCACACACTTCTCAGAGCTCGCCAGAACTGAACTGAGCTCCCATACATGCGCGCTTACATCTAAAAGGTAAAACAACCACAGAAGAAGTCCTCTTAAAGGGGACATTTATACACAGTGCACATCAAACAATAAGCGACCGTTACAATATCACAATAATTAACCTTGAAAAAAACAGCGCAATTACTACCAGATTGCTGTTGTGTTTGCGATAAGGAGGGACGAGGCTGAGTCCAGCTTCTTATTCGCAGCTTCTTATTAACTCTATCCAGTCCACCTTAAAAACCGCGACGCTTCCGTTTATCAAACTCAAAAAAACACAGCGGTTTTAATCTTCTATGCTTAGCATGCGGTCCTAGCGCCATCTTGTGGATAGACAACGTCAACAGTCTTTGATTAATGGACACGCTGTCGACGCGCTGTCTCTCAGAAATGATAAATATTTTAAAATAGGCACTATCCTTATAAATAAACTGCATAGTTGCAATCTAAACAACTACATTCGACTAAAATAGCCTCAAAAGTACATTGTTGCTCAACAGCAGGAGTATTTGTCAAAGTGTAGAATATCTCACGGCTATTAGCCAATCAGATTCAAGAACCAGACAGAACTATTGTATATGTATATACACACACACACACACACACACACACACACAGTTGAAGTCAGAATTATTAATTCCCCATGAATTATTCGCCACCGTTTATTTTATTCCCCTAATTTATGTTAAACAGAGAGCAGATTTTCAACACATTTCTAAACATAATAGTTTTAGTAATTCATCTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTAAATAATATTTGACTATTTATTTTCAGGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTAGGCAGGTTAGGGTAATTAGGCAAGTCATATAACGATGGCCTGTTCTGTAGACTAGTAAAAATTTAAAAACTGCTTTTACTCTAGCCGAAATAAAAGAAATAAGACTTTCTCCAGAAGAAAAAAATATTATAGAAAATAATATGTGAAAATTACCTTACTCTCCTACACATCATTTGGGAAATATAAATAAAAGAATCAAAGCGGGGCTAATAATTCTGACTTCAACTGTATGTATATGAATGTAACTGTCTTTATGCCTTTCAG
Seq C2 exon
AGAAATGGATGACAAAGTCATGGCTGAAATTCCTGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199:ENSDART00000113658:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.643
Domain overlap (PFAM):
C1:
PF0106717=Calpain_III=FE(46.1=100)
A:
NA
C2:
PF0106717=Calpain_III=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]