DreINT0005724 @ danRer10
Intron Retention
Gene
ENSDARG00000045199 | CAPN1 (1 of 2)
Description
calpain 1, (mu/I) large subunit [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr7:6555163-6557832:-
Coord C1 exon
chr7:6557775-6557832
Coord A exon
chr7:6555228-6557774
Coord C2 exon
chr7:6555163-6555227
Length
2547 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGA
5' ss Score
5.13
3' ss Seq
TTTTGTGTTTATATTCGCAGATA
3' ss Score
9.52
Exon sequences
Seq C1 exon
GACATGGAGATCAGTGTGACGGAGCTACAGACGATCCTGAACAGAATCATCGCCAAAC
Seq A exon
GTGAGATATAAACACGAGACCTTTTGATTTTAAAGGGTAACACTTTAGCTTGAGCCACAATTCATGCTATTATCTACTGATTTTATTACCTGCCCACTATTTAGATTTTGACTGTTTATTAGTAGTTTTAAAAGTATGATTTTATTCTACATCCCTAATACTCATTTAAACATGCATATGGACATTTTAACATACATATGGGACACACTAATTCTGTTTGAATACTTATTAGGATGGGTAGTGTGCAAATTAGGGTTCAGCAATAGACTTTAAAAACACATGCAGATGTTTTGTTTGTTGTTTCTAGAGTAACTGAGGCACAAGTTATAAAGGGTCCACCCCCTTCTGTAAAGGGGCGGGGAGCAGCAGCTCATTTGCATCTAAAGGGACACAGAAATAGAAAATAGTGTTGTTTCTATCGTTACGGAGGCACAAGCTATACTGCATCCACCAGCTAATTTGCATTTAAGGAGATGCACATGAAAACACATGAAAACAAAGCCATTTCTAGAGCAACCGAGGCACAAGCTGTAAATGCTCCACGAGCTCATTTGCATTTAAAGAAGCACAAATGAAAAAGGTGTCGTTCTAGAGCAGTGGTTCTCAAAATGGGGGTCGGGACCCCCCGAGGGGTCGCGGGGCAATGAAGGGGGGGGGGGGGGGGATTTCCAAAAATCTATTTATATTTATTAAACCATAAGAATTAACATATTTTATCCATAACTATACTGAAAATAAAAATAGTCGTTTATAGTTACTATATACTATATAGTTACTATAGTAGCTTATAGTTACTAGTTCTATTGGATTGCGACCCCTGGGGTAATTACATTATAATAAAGACAGCAATAGCGTCAGATGCATTTTGATTTTATAACACCAGGTTATACTTTCTGGCACATTTAAAGCACTGACACAGGTTAAAAAAATTTAATTGGTGTGTCTGCGTCATCGCATGCACGGTTTCTGTATTTATAACCACCTCAGAGGATATTGGGGGTTGCGAGTCACTGGCATTGTAATTTTGGGGGTCGCAGGCTGAAAAGTTTGGGAACCCCTGTTCTAGAGTAACCAAGGCACAAGCTGTAAGGACTCCTCCTCCTCATTTGCATTTAAAGAGACACACATGAAAACAGTTTTGTTTCTAGAATCACAGAGGCACAAGCTGTAAAGGCTCCTCCCGCTTATTTGCATTTAAAGAGACACACATGAAAACAGTTTTGTTTCTAGAGTCACTGATGCACAAACTAAAGTCTCCACCTCCTCATTTGCATTTAAAGAGACACACATGAAACCAATTTTGTTTCTAGAGTCACTGAGGTACAAGCTGTCAAGGCTCCTCCCGCTCATTTGCATTTAAAGAGAGCCACATGAAAACGGGATTGTTTGTAAGTGTAACCAAAGCATACATTGTAACAGCTCCACTAGCTCGTTTGCATTTAAAGAGACACGCATGAAAACTGTTTTGTTTGTAAAATCACAGAGGCACAAGCTGTAAAGGCTCCTCCCGCTCATTTGCATTTAAAGAGACGCGCATGAAAACTGTTTTGTTTGTAAAATCACAGAGGCACAAGCTGTAAAGGCTCCTCCCGCTCATTTGCATTTAAAGAGACGCGCATGAAAACTGTTTTGTTTCTAGAGTCACTGAGGTACAAGCTGTAAAGAATCCTCCCGCTCATTTGCATTTAAAGAGACGCACATGAATTCTGTTTTGTTTCTAGAGTAACTGATGCACAAACTGTAAAGTCTCCACCTCCTCATTTGCATTTAAAGAGACACACATGAAAACTGTTTTGTTTCTAGAGTCACCGAGGTGCAAGCTGTAAAGGCTCCTCCCACTCATTTGCATTTAAAGACACCCATGAAAACTGTTTTGTTTCTAGAGTCACTGAGGTACAAGCTGTAAAGAATCCTCCCGCTCATTTGCATTTAAAGAGACGCACATGAATTCTGTTTTGTTTCTAGAGTAACTGATGCACAAACTGTAAAGTCTCCACCTCCTCATTTGCATTAAAAGAGACACACATGAAAACAGTTTTGTTTCTAGAGTCACCGAGGCACAAGCTGTAAAGGCTCCTCCCGCTCATTTGCATTTAAAGAGAGCCACATGAAAACGGCATTGTTTGCAAGTGTAACCAAAGCATACGCTGTAAAAGCTCCACTAGCTTGTTTGCATTTAAAGAGACACACAAGGAAACAGCGTTGTTTCTAGGATAACCAAAAGCATACGCTGTAAAGGCTTTACCTGCTCGTTTGCATTAAAAGAGACACACATGAAAATTGTTTTGTTTCTAGAGTCACCGAGGCACAAGCTGTAAAGGCTCCTCCCACTCATTTGCATTTAAAGAGACACATGAAAACAGTATTTTTGTTTCCACTCAATAAAATGACCTTTACAGCATGGTAATTGATGATCCATGACCTGTTTCCTGCGGAAACTTCAGACACATTACAGGAACACCCGAGAATATTATCACACCTAGTAAAAAGAGCGTATTTCAAGCAAAGTAAGTGAATAATGAACCTGTTTTGTGTTTATATTCGCAG
Seq C2 exon
ATAAAGATTTAAAGACAGACGGCTTTGGTAAGGAGTCGTGTCGGAGTATGATCAACCTCATGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045199:ENSDART00000113658:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
NA
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]