DreINT0006489 @ danRer10
Intron Retention
Gene
ENSDARG00000043171 | CELA1 (3 of 7)
Description
chymotrypsin-like elastase family, member 1 [Source:HGNC Symbol;Acc:HGNC:3308]
Coordinates
chr22:7457234-7457797:+
Coord C1 exon
chr22:7457234-7457325
Coord A exon
chr22:7457326-7457696
Coord C2 exon
chr22:7457697-7457797
Length
371 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGA
5' ss Score
10.03
3' ss Seq
AATCACCATCATTTTCTCAGATC
3' ss Score
6.39
Exon sequences
Seq C1 exon
CACTGGCTGAGCCCAGATATCTGGAGGATCTGGCCATTGAGGAGAGGGTTGTTGGTGGAGAGGTCGCAAAACCCAACTCCTGGCCCTGGCAG
Seq A exon
GTACGATATTTTAACTCAGCTAAACTTTTAAAACTCACTATCTTTCCCGTTTTGATGGTTTATTTCCACAGCAAAGTGAGACAGGGTTAAGGTCCTGTTCATTGTACAATAGAAAATGTGTTGCTGTGTTATTAAATGAGCATTACTTAAACATTACATACTTGTACGTTTCTCTTAAAGTGACACATGAAACCTCTTTAAATGTCTGTAATGCAAATGTTTGGCACATTATATAAGTAATTAATTTCTAACTGGGACTTTTTATCAATAAACCACAAGAACCACACACAGATAGCGTGATGCCAAGACAGCATCTGAAGCTCCAATGAATTACAATAGATTTCTAACTAAAATCACCATCATTTTCTCAG
Seq C2 exon
ATCTCTCTCCAGTTTCTGTCTGCCTTAGACTACTTTCACACCTGTGGTGGGACTCTGATCAGACCAGGATGGGTGTTGACTGCCGCCCACTGCGTTGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043171:ENSDART00000034586:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=45.2)
A:
NA
C2:
PF0008921=Trypsin=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]