MmuINT0034146 @ mm9
Intron Retention
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141378145-141381539:-
Coord C1 exon
chr4:141381445-141381539
Coord A exon
chr4:141378243-141381444
Coord C2 exon
chr4:141378145-141378242
Length
3202 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCTCCATCCCCCTCCCCCAGGTC
3' ss Score
11.65
Exon sequences
Seq C1 exon
CCCTCAGCTGTGGGTACCCCACTTATGAGGTGGAGGATGATGTGAGCAGGGTAGTTGGGGGTCAAGAGGCCACACCCAACACCTGGCCCTGGCAG
Seq A exon
GTAAGTCAGCCACACATGTGGGTCTATTGTGTGAATATGGATGAGGCCTGGTAGAAACACAGACGCACCAATAAGATACATTCTGACAACCTTGGCCAATTTGGGGGCTGAGGGAAAGTTTACTTCTCCAGAGACTTCAAAGAGGGGGGTCCACCACTCTAAGACACATTTGCAATGCCTGCAGATTTAAAATTAGATGCTTGCTGGCACATACAGGTTACTCCATAAGTCAGTCACCTCTCCTATGCAAATGCTCTGTGCTGGAAGAGACCAATCAGAGCTGCTTATGCAAATTAGTTCTTTGTTTTTGTTGTAGAGGGCTTATTTTGCTTTGATTTCTTTCTCGGTGTAACTATCTCTGATTGTCCTGGACTCGTTTCTTAGAGCAGGCTGGCCTTAAACTCACAGAGATCCTCCTGCCTCTATCTCCGAAGTGCTGGGATTAAAAGTGTGCCACCATCTGGCTTGCAAATGAATTCTTTGTTATAATGTTACCAATGAAAATAACTGTTTGCTTACACTGATCTAATCATACTCACATCATATCAAATTGAAATTTGACACAGCACAAATTACTAGGTCTTTCCATAGGATGAATGTGACCTTTACAATCAATATATTTAAAAATCTCTTGCTGGTGTTGCCTTAAACCCAGCCCTTGGGAGACAGAGGCAGGAAGATCTCCAGACTGGAGGCCAGCCTGGTCTACAGAGGGAGTTCTAGGCCAGCCTGGTCTACAGAGGGAGTTCTAGGCCAGCCTGGTCTACAGAGGGAGTTCTAGGACAGCCAGGGCTGCACAGAAAAATCTTATCTTGAAAAACCAAGAAAAGAAAAACCTCTCTTACCTGGGATAACTTGTGCTTGCTGCTCTTTCAGAGGACCTGAGCTCTGTTCCCAGGACCCACAAAGCAGTTTACAACAATCTAGAATGTTCCAGGGGATTGGTGCCATGTTTCTGGCCTCCTCAGGCATGAGACAAAACACCGGGTACACATATATACATGAAGGCAAACAGGCACACACACAGAAGCCAGGAGGTTTGTTTATATATTTACTTCCTTATTTACTTATTTAGATGAGGGCCTCCCTGTGTCGCTCTGGCTCCTCTGAAACACACTGTATAGACTAAGCTGGCCTCAGACTCAGATTCATCGGAGTGCCGGGATTAAAGGCCTGTGCCACTATTCCCAGCCTAAGTAAGCACTGACTTATGCCTGTGGAACAGTTAGGTATAAACTCTGTCCACAGGTCCCACTAGATATAGTTAACAGTCTTCTTGGGATTGCTATGCTCGGCTGCCTTTGTTTGCTCAAATCTAAAATGGGCATGATGAACAAGAGTTGTGCCTTGTGGGGTAACAGGACCGGTGGGAGATTACATGTGTGCCCACCTCTGATAAAGATATACCACCTGATGACTGCCACAGTATTTGGAGTGTTGTTCTATCAGAATTATCAGTGATACCAGAGAGCACTGGTCAAGTGCTCCCTATTTTTCTGATAAAGGTACTAGGACTCAGAATGGTTGTGAAACAGCCCAAAGTTAGCCCCTTGAGCTAGGGAAGACTCAAGATTCAAATCTGATTCAGGCGTTGAGTACGGTGCTCAGCCGGTCATTTGCAGGAAGCTGTGGGTTTGGTCTGCAGCACCGAATAACATTTTGGACATGGAGGTGCATGAATGTCCACCTAGCTCTCAGGAGATGAAGGCAAGAGGATCAGGAGTTGGGGCTCATCTTTGATAATATAAAGAATTTGAGACCAGCTTGGAGTATATGATACATCTCAAAAAAAAAAAAAAAGAAGAAGAAAAATTTAATGCAACCGATTTTGAAGTCCCCTCCATGCTGTAGGGAGCTATTTCTTACTCCCCAATCAACTTGCCTGGTTACCCTTCAGAACCCAAATCATTGGCTCAAGTTCTGCCCATGGGAAAAAGAGTTTCTCCCTCTAGGGAGGTTTTATATGCTCTCAATGGGAGCAGCAAGCTTTCAAGGATCTTTCTTTGTTTTGTTTATTTTATTACATGTATTTGCAGGGGATGGGGTCACATATGCCACCACACTCATGTGAATATCATAGGACAACTAGCAGGAGTAGGTCCTGTTTTCTGCGCGGATTCAACGAGGTCCTGGGGCGTGACCCCCTGTTGTCAGTTACTCACTGAATTCTCAGTGCCCTGCATTGTCCCTATTTTAAACATTTTCCGGGTCCCACAGTACTAGGGACTGAACCAAGAGTACTGTCTACTGTCTTGCTCCTTATAGCTTACTCACTCTGCTTTCTCCTGGCAAACCCAAAAGTAGCTCCGCCCACAAGTGGGAGGGTCCTGCCTGCATCAGCCATCAATCATCAGTTAAGAACATACACCACATGCTTGCTTACAGGCCAATCGAGAGGGGTTATTGTCTCAGTTTGGTTCCCTCTTTGCAAATGAGGCTAACTTGGGTCAAGTTGACATAAAACTTGCCAGGAAAACATTGACATGCTTGTGTACACTGTTTTGGATTGGGTTGTCACAGAAACTTCATGGAGAAGGTGGCATCCAGGAAGAGACCAGTGGGAAGTAGGGAAGGTTCTGCCAACAGACTGTAAATGCAAAGACCTTAAGACAGTGGTGGGTCAGCCTAACCGAGTGACAGCTCGACAGAGGTCAGTGTGGCTGGCACAGAATGGAAGTGAATGCCTGAAAGGGCAAAGAGATAGTGTAGGACTTCATCAAATTACCTTACATGAGAGGAACCTCAGGATGGTCTGGGCAGAGCATAGTTTTCATCAGAGTTATGTTAAGAAGGGATTTTTCTGGCTGTGGTGAACCGAGAATACAAGGGTGAGCCGGCATGGTGGCTCACACCTGCAATCTTAGCTCTTGGGAGGTAGATTAGGAAGATGGGGGTGGGGGGAGGGGCGGGGTTAAAGGTCAGCCTGGGCTACATAGCCAGACTTTCAGAAATGAAAGAAAACACAGGATGAGGGTTGAGCTAAGTGCTACAATGCAGGCTCACTAGGTAGCCCAGGCTGGCCTGAAATTCTCCATCCTCCTGTCTCGGCCAGGGCTCTGAGTGTTGACATTAAAAACATATCATGCCCTTCTTAGTCAAATTTTTAATATTTTGTTCGTCGTAGATTTGTGTTAGGTTTTGCTGTTGTTTTGAAACAATTTCTCCCACCCAAGCATCTGTTCTCTCCATCCCCCTCCCCCAG
Seq C2 exon
GTCTCCCTGCAGGTCCTTTCCTCCGGAAGGTGGCGCCACAACTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACAGCTGCCCATTGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579-Cela2a:NM_007919:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=43.8)
A:
NA
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: