GgaINT0134352 @ galGal3
Intron Retention
Gene
ENSGALG00000013701 | F1P457_CHICK
Description
NA
Coordinates
chr21:4996374-4996662:-
Coord C1 exon
chr21:4996571-4996662
Coord A exon
chr21:4996472-4996570
Coord C2 exon
chr21:4996374-4996471
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GACTCCGTGCCGCCGTCCAGATC
3' ss Score
4.75
Exon sequences
Seq C1 exon
CCTATGGATGTGGGCAGCCAGCGGTGCCACCGCTGTTAGGCGCTCGCGTGGTGGGCGGTGAGGACGCCCGTGCTCACAGCTGGCCATGGCAG
Seq A exon
GTAAGGGGGGGGACCATGTGCCACGTGGGGTCCATCCCCACCGTTGGTGGCATGGGGATGGGTGGCCACCACCCCTCATGACTCCGTGCCGCCGTCCAG
Seq C2 exon
ATCTCACTGCAGTACAGCCGCGATGGAGCCTGGAGGCACACCTGTGGAGGAACCCTCATTTCCCCCAGCTGGGTGCTGACGGCCGCACACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701:ENSGALT00000022280:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.4=45.2)
A:
NA
C2:
PF0008921=Trypsin=FE(16.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTATGGATGTGGGCAGC
R:
CTGGGGGAAATGAGGGTTCCT
Band lengths:
160-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]