DreINT0062416 @ danRer10
Intron Retention
Gene
ENSDARG00000056765 | ela2l
Description
elastase 2 like [Source:ZFIN;Acc:ZDB-GENE-040511-1]
Coordinates
chr8:21339117-21339603:-
Coord C1 exon
chr8:21339515-21339603
Coord A exon
chr8:21339215-21339514
Coord C2 exon
chr8:21339117-21339214
Length
300 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTGTTCTGTTCTTCATCCAGATC
3' ss Score
10.75
Exon sequences
Seq C1 exon
CGTACAGTTGTGGGCTTCCCACTTTCCCTCCTATTGTGACGAGGGTTGTGGGAGGTGTGGATGTGCGTCCTAACAGCTGGCCCTGGCAG
Seq A exon
GTATGAAATTATTACATTACTTAATTCTCTACAGTCACAGTGACCGAAAAAAAAAAAAACTGATTTTGTATTTCATTAAAATTTTCATATCATTTGGAGTAAAAAAATAAATAAAAAAAACACTGAAAAGCATAGCGTTTTCAAAATAAACTTTTGTATCTTCATCTTCTACAACTTTACAACCAGATTCTCGAAGTTTTAATCATACAGATAACATAAATGAACGTATAGTTAATTTGCTGACTTACAAACAAACGTTTTCAAGGATAATTACTGACCCCTGTTCTGTTCTTCATCCAG
Seq C2 exon
ATCTCCCTCCAGTACAAAAGTGGAAGCAACTGGTACCACACTTGCGGTGGAAGCCTTATTGACAAACAGTGGGTTTTGACTGCCGCTCACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056765:ENSDART00000079293:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=46.7)
A:
NA
C2:
PF0008921=Trypsin=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACAGTTGTGGGCTTCCC
R:
GCAGTGAGCGGCAGTCAAAA
Band lengths:
182-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]