RnoINT0043256 @ rn6
Intron Retention
Gene
ENSRNOG00000013745 | Ctrc
Description
chymotrypsin C [Source:RGD Symbol;Acc:1308379]
Coordinates
chr5:160402039-160402311:-
Coord C1 exon
chr5:160402220-160402311
Coord A exon
chr5:160402137-160402219
Coord C2 exon
chr5:160402039-160402136
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
GATGTGCGGTCCTTCTGCAGGTC
3' ss Score
10.65
Exon sequences
Seq C1 exon
CCTCTTGCTGCGGGAACCCCGCCTTCCCACCTAACCTGTCAACCAGAGTGGTAGGAGGAGAGGATGCTGTCCCCAACAGCTGGCCTTGGCAG
Seq A exon
GTACGCATGCTGCAAGGCAGATGCAGGGGTTGGAGGGGCAAGGCTGGGCAACCCCGGAGGGATGATGTGCGGTCCTTCTGCAG
Seq C2 exon
GTCTCTCTCCAGTACCTCAAGGACGACACATGGAGGCACACCTGTGGGGGAAGTCTCATCACCACCAGCCACGTCCTCACTGCCGCCCACTGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013745:ENSRNOT00000018393:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=45.2)
A:
NA
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGCCTTCCCACCTAA
R:
GCAGTGAGGACGTGGCTG
Band lengths:
159-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]