MmuINT0043661 @ mm9
Intron Retention
Gene
ENSMUSG00000062478 | Ctrc
Description
chymotrypsin C (caldecrin) [Source:MGI Symbol;Acc:MGI:1923951]
Coordinates
chr4:141400916-141401187:-
Coord C1 exon
chr4:141401097-141401187
Coord A exon
chr4:141401014-141401096
Coord C2 exon
chr4:141400916-141401013
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GACTCAAGGTCCTTCTGCAGGTC
3' ss Score
5.05
Exon sequences
Seq C1 exon
CCTCCAGCTGTGGGGACCCCACCTTCCCACCCAACCTGTCAGCCAGAGTGGTAGGAGGAGAGGATGCTGTCCCCAAAGCTGGCCTTGGCAG
Seq A exon
GTAAGCTTGCTTCGAGGCAGATACAGGGGTGGGAGGGGCAGGGCTGGGCATCCCCGGAGGGCTGACTCAAGGTCCTTCTGCAG
Seq C2 exon
GTCTCTCTTCAGTACCTCAGGGATGACACTTGGAGGCACACCTGTGGGGGCAGTCTCATCACCACCAGCCACGTCCTCACTGCTGCCCACTGCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062478-Ctrc:NM_001033875:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(2.1=12.9)
A:
NA
C2:
PF0008921=Trypsin=FE(13.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACCTTCCCACCCAA
R:
CAGTGGGCAGCAGTGAGGA
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: