DreINT0062420 @ danRer10
Intron Retention
Gene
ENSDARG00000007276 | ela3l
Description
elastase 3 like [Source:ZFIN;Acc:ZDB-GENE-060710-2]
Coordinates
chr5:25516572-25518500:-
Coord C1 exon
chr5:25518412-25518500
Coord A exon
chr5:25516670-25518411
Coord C2 exon
chr5:25516572-25516669
Length
1742 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ATTGTGTGTCCCATTATTAGGTC
3' ss Score
8.36
Exon sequences
Seq C1 exon
CCTTTGGGTGTGGAAAACCACCCATTGAGCCTCTCATGTCTCGTGTGGTCAATGGAGAGGAAGCAAGACCTCACAGCTGGCCCTGGCAG
Seq A exon
GTATTTACCGATACATTTTTAAAAATATTCTTTATTTCTAAATCCATGTCATTTCTACCTCTGTCAAACTCTGCCACTTAAAGACTTAGTTTTCCCCAAAATGGATTTACCCACTATTTACTCAACTTCAAGTGTTTTCTAACCATTATGAGTTTTTCTTCTGTTGAACACTAAAGAAGACATGAGAAAGAAAGCTGAATCAAACTGGAAACCTCTAACCAGTGGCTTCCATAGAACTATGAGAGTCAATGGTTACAGTTTTTCAGCTTTCTTGAAAATATCTTCTTTTGTGATGAACAAAAAAAAAAAAAGAAAAAAAAAGAAAGAAAGAACAAATAGATGGTCAAATCAGTTTGGAACAAGTAAAGGGAGGGTAAATGTTGACAGAATTTTTATTTTTGGGTTAACTATCATTGTTGATTAAATTTTCAGTTCTGAGAGATTAGTGGCTATATACATATGTTCAGTCGTACAATTTTTTTAAAAAAATTGGTATGAAAAACGATTTTCCTTACCACCCATAAACCAACTAGAAAATCCTACTAAACTGTACAAATTAGGTCAAACAAATTACATATGAATTTGCCACTAAATCAAAAATTGCTGTGAGAAAGTGTTGGTCTGTCTTATTTTCCACACAATTTTAGCATCTGTTTCCTCCCTTCATTACATTCCTGCATTTGGAATACATTTTTACCCAAGTAATTAACATAATTCAAGCAAAACAGTCTGTCAGTGGGGTAAGTACACTGGAAAAAAGCTTTCATTCATCCAGTTTTTAAAAAAAATGGGGTAATATAGACATCTACATTTTTATCACTTGATCCAATGAAAAATAAATAATTTGCCTTAAACAATATTTTCTATCTCCATGAGAGCAATTTTATATAACCTGGAACAAAGCATATTTGTCTTGTTGAAGAAAGTCAATTAATTTAAATTCTCAGCTAAATTTGATTACTTGAGCCAATGAAAAAGAAATCATTTGCTAAATATTTTTTAAGTTCATGACTGAGTTTTTGTTTAATATGCATGCACTAACCTGTGTGAGTAATCTTAAAATTGGTCAAAACAAATTTTTCTTAGTTGAGCTCCTAATAAAAAAAAACATTTATATTAAACTGTGTTTTGAACTTAAATTACTTGACAAATAACAAGTAACAAATAATTATCTGTTAAATTACTTTAACAAATAATATTAAACTGAAATGAAAGATACATGTTTAATTTGATAAAGTACTGCTTGATTTTTTTTCAGCGTACAATAAGCTTGTTTCAAAAGGAAAACAAGATTATTTTATTTACCTTGGTAGATGATTTAACTTATTTTAGGGAAAAACTCACTTAATTGTGACATTATTTCTGAAAACAAGACAATATTTCCCAAACAAAAAAAAAACTTTTATTTTTGCTCCTTTAAACTAATTATTTAAAATTAGCTACAACAACACAACAGATTTCCTTGGGACAACTTAATTTTTTATGTTCAAATAAATTTGTTAAAAGTGTTAAGTTAACTTAATTCATTCATGTTGTCCCAACACAAATCGATTGTCACATCCCAGTATATTGATGTGGACTGTGTGTTCGTTAAAAACCCCTGGATGTCTTTCAAAAAACTGGTGGTGGATGAGGAGATCCCCTCCATTGTGTAAAGCGATTTGAGCGTCTAGAAAAGCACTATATAAATGTAAGGAATTATTATTATTATTAAATATATTCATTGTGTGTCCCATTATTAG
Seq C2 exon
GTCTCTCTGCAGTATCAGAGTGGAAGCTCATTTTACCACACCTGCGGAGGATCTATCATTGCTGAAAACTGGGTGATGACTGCTGCTCACTGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007276:ENSDART00000009028:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=46.7)
A:
NA
C2:
PF0008921=Trypsin=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGGGTGTGGAAAACCAC
R:
GCAGTGAGCAGCAGTCATCAC
Band lengths:
182-1924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]