DreINT0007156 @ danRer10
Intron Retention
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62729121-62731792:-
Coord C1 exon
chr5:62731650-62731792
Coord A exon
chr5:62729293-62731649
Coord C2 exon
chr5:62729121-62729292
Length
2357 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
GCTTGCTGTTTTGTCCTCAGGCC
3' ss Score
10.8
Exon sequences
Seq C1 exon
CTAACAACATAAATCTAGATGAGCTGCTGGAAGAGATTGGAGCCCTGAAGGAGACTCTTCTACAACAGAATAACTTCCTTTCCAGTTTAGGAGATCCTTCACCAAACACTGGATATTGGTATTATGTACCCTCAAATCAACAT
Seq A exon
GTAAGAAATCATATTACACAAAGTAAATGATTTGTAAATGACTTTACTTGAATGGGGTATTCGTATGACTCTCATGAAACCTTTATAATCATGATTATTATCATGACACGCCTCATGAATGTGACTGAGATTTTATGCATGCTTATGGCAACTGTTATTAATAGTCATTTGCTCAGTTATGTCATTTTATAATGTAAATATGGCATTGTTTGTTATGACAGCTTGACATATACTAATATATCACAACCGGTCTTTATATTTGTCATGACAACTTGACATTACCAAGACAACACAACTTGTCATACATCTGTCATAAACATTATTGTCATTAGGCCATTATAATTGTGTCATGAATATTTTTCTTATCACTTTTCACTGTGGAACAAACTGTATTTGTCATTAAAATGTCTTAATAAAAGTGTCAGTAATCATTTTCACGAGCATTGTTAATATTTAATGCCAAATTTAGATCACACCACTGCAGTTGAGGGTAAAAAAAAGATTAAATTTCATTCAAAGTCCGTGACATTTTTATAAGGGCTTCATGACAATCATGTTTATGACAGATTTATGACAAGATTTGAATGTCTTAGTAATGTTGACACAGTTAAGTCATGACAGACAAAAACATAGGTTGTGATGTATTTGTTTATGTTAAGTTTTGATGACAAACAATGTCATCCTTGCATTTAAAATGTGATAACTGATCGAACGACGCCAATGGCAGTTGTTATATGCAGGGACGATTTTAGGATTTTAGGGGGGCTCAGCTCCTTATGGGGGTAAACAAAAAAATATTCATATATGTTTAAATACATTTTTAATTAAGAATTTAATATTAATACACTTAAAAATGTTTGACTAGTATGGTAGGGTAGTGTAGTAAATAGCAGTATTCCACTGTATTGCATAGACAGACATCGCCATTTGAGTTCTGAAAGAGCCTGTTACACTCCTGTTTACTGTAGTACAAACCAGCTTCTTTACTCAAGTACATTTTTTTGTAATAAATAAATTAAACTAACACTTTTCTGGCATAAACATATAAAAATATACAGGCTAACATATCTCACTATCATAAGATAAGCTATAATAAGAGAATAGGAAATTATTTTAATAAAATACAACACATGATGTTTCACTCTGATGTGCAATTAAAATGAGTACATTCACTGAGTGGTTCTGTCACTGTGTTTAATCCTGTGCATGTATGGTTTAGGTAATGCCACATGCACTGTAATGTGTTTTATATTCATAGTTAAATTAGTAATAAACATAATAAAGTGTTCATTAAGAGGTACATTTTTGCTGGAGCAAACAGCTGTAATGAGGTGAGCGACGAGGAAAGAGTAGATGGTAAACCCTTTCGCTCCTCCATGACATTAGGGTACAAATAATACAAGTGTTTCTGTATTATAACAATCTATCGATAAACAGACCTGGTTCTCTCGCTCACTCTCTATGTGGTTTGCTGATTAAATAAAAAAAAACAGTTTAAAAGGAGGAGTGGAAGTCTACAGCTGTTTTATATGAAATTTAAAAGGAATTCAGGTGATAATTTAGTAGAGTACAGTTCATGAGCTAATCGCAAAACTTTTATGGGGGCTAAATATACATATAGGGGGTTAAAGCCCTCCTTAAAGGGCCATGAAACCCCCTCGTTTCAGCAGGGTGTTTTCACACCTCTACTTTGGGAAAAGTCAGAAAAGTGGGCTGGTCCAGCTTTGTTTAGGGCGGAGTGTCGGAGGAAGAAAAGAGTCCACACGTGACTCCAGCTGAGGTCTCACAGAGAGAAAATGAAAACAAAACTTAACTGCAGCAAACTATAAAAGCGACACTTCACGCTTGTTTTGCCAACACAACGTGGCGTCTCTGTCGTCTAAACACTATGACAGTAATGAATATTAATGAAGTTGCACAATAGAGCGCGCTGATTGGTTTGAACCAAGCCTTACTCATGCATTAATGCATCACACTGTAAGACGTAATAAGACACACTCTGGCACAGACGCCCAGTCTGCACGCTGGAATACATGCTATTATGTCATGACCGTGACGCAGTTTCAAACCGGAAGTACGAATTTGCTTGAAATAACGCAAAATTAACCAATTTACACTTTTTTTGTGAAATATATGTGTCCTAATAGTGTTTTTAGCAGTGTGGGACACATATACGACTGTCAACAGCTCAAAAAAATGTGTTTTGGTGTTTCGTGACCCTTTGAAGTGGCCTAGTGATGTACGTGGGTATAAACATGATTATAAAGTTTTCATGGCAGTCTTATGAACACCCATTCAAGTAAAGTGTCACCATCACTTGTGTTTCTATTATAATCAGCTTGCTGTTTTGTCCTCAG
Seq C2 exon
GCCCCTAGTTTGGGATCTCAGGGCACACAAGACTCAGGATTAGGTTCTGTGCACCCTCACTCCCCCGAGAGGAACCGGCGGTCCGGCAACAGAGCATGCAGAGAGAGAAGACCTCCTGCTAATGGAGGATACTGGGTCTATTCTCCTAATCCTTACTCTCATGGAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492:ENSDART00000131064:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=NA C2=0.897
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]