MmuINT0034545 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35004966-35007389:+
Coord C1 exon
chr2:35004966-35005114
Coord A exon
chr2:35005115-35007199
Coord C2 exon
chr2:35007200-35007389
Length
2085 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGA
5' ss Score
3.63
3' ss Seq
AGTGTCTCCTATCGCTCCAGGTT
3' ss Score
8.81
Exon sequences
Seq C1 exon
GTACAAAAGGAGGCATTGAGAACGTGTTAGAGGAAATCGCTGAGCTCCGGCATGCAGTCTCTGCTCAGAACGAGTACATCAGCAGCATGGCAGATCCTTTCAGAAGACAAGGCTGGTGGTACTTTATGCCACCAGCACCATCCTCAAAA
Seq A exon
GTAGGAATCCTATGTTGCTAGAAGTATATACTGAGTTTTTCTCCTTCCCCAAATTTGTTAGCAGGTGCTGAAACACTTTTCTGCTGAGACATACACTTAGGTTCTTCAGTGTTGTGTGTTATTTAAGATGTAAAAATCGAGCTATCCCACAGAAAATAGTGCTTGCCTTTTTATGGCCAGTGTCAAGAAGTAGATAAAAGGTTAGGATGGCCTAAGGCCAAAGAGCTGACTGAGAATGATTGTAGAATTGTGCAGAGGTGTGGACAGGATAATGGGTGCCTAGGTTTCATTTCCTTCTTAAAACAATCCTTGGGTGTTCACCAGTCTAGGCCAGTGCTAGGCTGTATTAGAGTGCTGTGATGGCTGATACAGCCCTGCCCTCGGAACTCATGGGCCGTGTGAGTGGAATTACAGAACAGTGACATGCTGTGACAGTAGGTTTGCCCTGTGTGTGTGCTCTAGGTACAGAGAGGTTGGTTTCAGGGATTCTTCTTGTGAGCAAGTTCAGGAAGGAAGCGGAATAGATGAGGCTGTGAGCTGAGCAGTGAGCGGGCACCCAGCGGGGTGTTAAGAGGGAGACACAGCGTGTGTAAAGAGGAAGGTTGCTGTGGCTCTAGTGAGGAACCTTGAGGGTTAGATGGTTTGCTGGGAGGGCTGAAGCATGAGCTGAAAGGTAGATTGGGGCTGTCTTAGTTACTTTCTGCTGCTGTGATAAAGCATGACCAACACTGCTCAGAGAATAAAGCGTTTCCTTGGGCTCTGGTTCCAAAGGTTAAAAGTCTGTCGTGGCTGGGAGGCATGGCGGCGGGGACAGACCTGTGAAAGTGCACATCTTGAACCACAGATACAGAGAGCACATTGGGAATGGTGAAAGGCTTTGAGCCCCCAGGCCTGCCTCCAGCAAGGCCACAGCTCCCCAAACAGCACACCAGCTAGGGACTGGGTGTTCAAATACAAGAGCCTATGGGGCATCTTCATTAAACCCACGGGGCCGTCCTTTACAAGGGGCCATTCTCTACGTCATGGGGAATGAGATTACTGTTAGTAGACTCAGTAGATCAGAGAGTGTTGTAGCTGAGCACAGGATAGAGTTACAGCAAGGTGAGCTTTCTGTGCACTATATGAACACCCACGTGAAAGACAGAAGAGACCAGAGCTAGATGAGTGGAGCTGGAAAGAAGGTACAATTAAGGGGTGAGCTTGCTACCTGAGCTTAGACATGAGGAGTGGATCTAAGCAGGACTTATCCAAAGCAGAGGGCCTTAATGACACTCTGAGAGTCACTGTAGGGCAATAGCAAGGAGATGCACCTCGGACACCAGGGTCCCAGGGCTCTGACTGTAGTCATAACCTACATGCAGAATACCCCCAGAAATGTGAAGGAAGCCAACACCCTGTCACCAAGGAAGAGACAACACTGTCCGCCTGTGCTGAGTGTGCTCCTGGAGCCGAGACCTACACACTGGGAAGCAGGGAGGGAGGGGTAGCATGCTCCCAGAGAACACTGCGCTCCAGCTTCCTTGAAGGTGTTGGGTCCCTTACCTCAGCTGCTGGCCCTTGAGGACAAGGCAGAGGAGAAACCATGGCAGTGCCGAGTGCAGGTGTGAGGAAGGGGCACTCAGGTCTAGTCACTTAGAGGACTTACTTCTCTCTTATGGCAAGTTGTGCCATAAAATAAATTCACACAGCCAGGTAACACGCCGTTACCACCACAGTACCACGAGGACCCGTGTGCCCAGAGAACGGCCAAAAGAGCGGGGTGGGAAATGGACGCTATTGCATAACTTCTTGAAGAGAGCCCATCTCTTTCACAGAGCAGTCTGACAGGACTCCAGCTACTGCTTCCATAATCCTCGCTGCTCAGCCTACCTGACACTACTGTGTCAGATTTAATATGCTGAGCCATGTGTGTGGACTGTAGTTTATACCTGTAATCACTTTTTATTTCTATCTGTAAGAAATGAGCGGCATGATAAGGAAGTAACAAATTCTTTCTTAGTTTCCATGTATCTCGCCTTGGCTGTCCACTTTGACGTGTCTAAAGGTCAGCCTTTCCATGATAGGCAGTGTCTCCTATCGCTCCAG
Seq C2 exon
GTTTCCAGCCATAGTTCTCAGGCCACCAAGGACTCCGGTTTGGGTCTAAAGTACACAGCCTCAACTCCTCTTAGAAAACCACAGCCTGGACAGCAAGAAGAAAAGGACAGCAGTGGACCTCTGCCTGCTTCAGGGTACTGGGTCTACTCCCCCATCAGAAGCACGCTGCATAAGTCATTTTCAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:22
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: