DreINT0007160 @ danRer10
Intron Retention
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62725726-62727025:-
Coord C1 exon
chr5:62726863-62727025
Coord A exon
chr5:62725857-62726862
Coord C2 exon
chr5:62725726-62725856
Length
1006 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
3' ss Seq
TAATGCACGTGTGTTTTCAGACT
3' ss Score
5.81
Exon sequences
Seq C1 exon
GAGTGGTCTGGAAAGCACTTTATCACATGCAGAAGAAGAGCAGTGTGTGCTGGGAGAGGTGGAGTGTTTGGAGAAGACCCTGCTGAAGCGCAGAGCCGAGCTCAGAGAGGCTGACCGACGGCTGCTGGAGGCTGATGCACAGCTTAAAAACACTCAAACCAAG
Seq A exon
GTCTGACATGTCTGCTTCTCACTTTTAGGGGAGCCACACTATTAACTTAAAGGGTTCCCACACAGAAGTCTGTTATATAGCAATATATGCAAATGACATATATGAGATACACGTTCATATTTGGATTTCACATACAGTTGAAGTCAGAATTATTAGCTCTCCTGAATTGTTAGAGCCCCCTGTATATTGTCCCCATTTCTGTTTAATGGAAATGTAATTTTTATTGCATTTCTAAGTATAAAGGTTTTAGGTACTAATTTTTAATAACTGATTTATTTTATCTTTGCTAGGATTACAGTACATAATATCTTACTAGATATTTTTTAAGGATAAAGTGCAATTTAAAGGCTTAATTGACTAGGTTAATTAGGCAAGTTAGGGTAATTAGGCAAATCATTGTATTACGAGATTGTAAACAATTGGAAAAATATATATTGTTTAAGGGGGTTAATAATATTAACCTTAAAATGGTATTCAAAAACTAAAAGACTATCTCCGGGAGAAAAAATATTATCAGAAATACTGTGAAAAATTCCTTGCTCTGATATAAATAATTTGGGAAATGTTTGAAAAAGTAAGCAAACAACAGCTTTGATGTAGTCATTTATTTGTTATGAGCTTGTTGTGTAGTCAAATATGTGTTCAACAGGGTTGCTTGACTGTATTTAAACTATTTTAGACTATTTTGATATTAAATTGATCTTTGTAAATGTAATTGACATACTGTCAGCTTGGAATTAAAAGATTCTATCTGCGTTCTGAATGATTTTAAAGTTTGCATTCCTAAGCAACAGTATGTGTGTAACATTTGTTTTTTGAATAAGTCTTAAAATGTAAACAACTCATAAAAAAACATCCCATAATGTAAATAAGATGTCATTTAACAAGAATATGTCAATAACTCAATGTTGACAAAAATGTCAGATAGAACCGTATAATTCTAAGGTGACAATACATCAATGTCCCATAAGAAGATGTTGACAATCTAATGCACGTGTGTTTTCAG
Seq C2 exon
ACTGAAGAAAACATTCATCACTATAATGAGGCCAAAAAGAGAATGGAAGAGACAGAACGAGAGCTGGCAGAGATAGAAAAGAGAGCTCAAGACAGTGGAAAACTTCTAGTGCAAAGCAAACAACAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492:ENSDART00000131064:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.509 A=NA C2=0.617
Domain overlap (PFAM):
C1:
PF138631=DUF4200=PD(20.8=27.3)
A:
NA
C2:
PF041569=IncA=PU(17.9=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTGGAAAGCACTTTATCACA
R:
CAGCTGTTGTTTGCTTTGCACT
Band lengths:
289-1295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]