RnoINT0038567 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14350507-14353369:+
Coord C1 exon
chr3:14350507-14350699
Coord A exon
chr3:14350700-14353238
Coord C2 exon
chr3:14353239-14353369
Length
2539 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
AATGACAGTTTCTTCTCTAGACA
3' ss Score
5.57
Exon sequences
Seq C1 exon
GGACTTCATTGATGGAAACGTTGAGAATCTAATGACTGAACTAGAAATAGAAAAGTCTCTCAAACATCACGAGGATATTGTAGATGAAATTGAGTGCCTAGAGAAAACTCTCCTGAAACGTCGCTCGGAGCTCAGGGAAGCTGACCGACTCCTGGCAGAAGCGGAGAGTGAGCTCGCATGCACCAAGGAGAAG
Seq A exon
GTGTGTCTAGTGTGCTCAGGCCGGGCTCCTGTGGGACACAGGCAGCCTCCTGCTGTTCTCCTAAAACTGTAGAGAAAGGAATGATGGCAGAGAGCCCGCTGGCCTTCCGAGTGTGGGCCCTGGAGTCAGTCACCGAGGTTCTCTGAGTTTGCTCACCTCGTCTGTAAAGTCAAGCTAAGAATGTGTGGACTGCTGAGTGTGGATTGAATGCATGCTTTACATTCCAGACTGTGCTGTTGGAATGTCCTACGTGCCTGGCTGAGTGTGTTGGGGTGAGGGGAGGTGACTCTATGTTTGTTTTAACTTTGGACTTTCGATCTGTGTCTTTTAAATGACCAAATAGATTCTCACACAAGTCTTCCTGCATCAGGTTGATAACAAAAGTAATGATCTATTTTCAATTCCTGGGTTATAGATTTCTATTCATTTAGGTACAGCCAAGTTGGAATTGAGAGAAAGAAAGGTTCTGAGATGTTCTTTGCTGGTACATTACCTCTGTGGACTCCCAGGCCACAGTGCAGAAGAAAGCCAAAGAGGGAAGGCAACTTCCTCAGCATTTATGAACTCCATTTCCTTCAGCATCTCTGGCAGCCCTGTGAAGTGGTGGTAACTCAGCTTACACGTGCAACCCAGAGTCACATAGTGAAGCTCTGCCTTCTCTAGAGTTCTTTAGTTAAATGACAGTTCCAGAGAGAAGAAGGCCCTGGCCACACAAAGTACCTCAGGAACTATTTTTACTTTGTTGTTCAACTTGGGTCTATTTAAGTTAACAGAAACCTGTAGTTGGGACTGAGCGATTGGCTTCACCTATCCAATTCTGTGGATTATGACTGTTATTACAGAAACACAGCTCTTACCTCAAAGAGGTACAAGATTGTTTATCCTGGAGACAAATGTAAGGAACCATGGCCTGACATTTTATGTTCTAATAGTTTCATAAAGCTTTTATAGTAACAACACACAAAAAAGTCATAACCCAAGACATTTTCAAGTAGAGAAGTAGGGGCAGCCAGGCAGAGAGACTGCAGCTGCGGGCTTCAGGTACTATCCAGAAGCCTCCTGTTAATACAGCCCAAACGGTTTTTGGTTTTGGTTTTTAATCTGTTTTTCAAGATGTTGGATTGGCTTTCTCTGCTAGTCAACAGGGTGTTGGTCACCACACAGAGGTGGGCAAGGAATGTCTCAAGCTCACCCAGGAGAGCTGTAAAAGTCCATCTGCCTTTGCAGGCATAGCTCCTATTCAGGAATTCCTCCCGTGGTGTTGTAGACCTAGAGAAAACATATCCCCTGTATTTGTTTTAATTAGTGGCCTTGGCAGTGGGCACTCAGAGGCAAAGTGGCCACAGTGGAGAGACTCTCCTCCCAGGGACTCCCCTGAGTAGATGATGGACCCTGCTCAAGGCTTTGCTAATGAGCCGGCAGAAAGCAGCTGTCTGAAGAGATGCAGTGACATGTCTAAGTGTGGACCCTGCCAGTGAGATGTCACCCGTGGGACAGTAATAGACAGATTTACTCACAGCCGCTTCTGCCTTTGGAGGGCGTTTGTACATCAGTGCAAACTAAAATCTTAGATCTATTAAACCTCTTGCTCTAGATAGACCAGGAAACCAAGTTGATTTTTTGAAAGTGTTTTTTGCCCAATCTAGCACAGGAGTGTGTTTAAAGACTAAATCCCCATGACAAACTGAGGGTCCTTTTCAGCTTACAGTGTCTCTAAGAAGATCTGTGCACAGAAGTTGGTAAAGTTACTACCATTTGTTGGCTGAGTTTGATAATCACAGTTTGGAGTGTAGATGTCTCCATCTTCAAATGACTTTTTCATAAGTACTCCATCTTTGTTGACACAAATGTAGTTTTCTATAGTTCCTCTCACAGCACTTATACCATTTAAGATATTTTTCTGACCCAACATATTCTAGCATCTGCATGCTGAGACATTGTGATTTTTTAAAGACTAGATAGTATTCTGTTTTATTACACTATTTTTATTTATCAAGATTTATCTTATCTTGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGGGATCCAGTGCCCTCTCTGGTGTGTCTGCAGATAGCCACAGTATGCTCATGAACATAAAATAAAAATAAATCTTTAAAAAAAGATTTATCTTATCTCATTACATTTTTATGCAGTAGTTATTTGGTTCTGGATAATTTTCTAAGCATTAGAAATTCACAGCAAAGGAATGGTTTAATGTTTTTACATTTCTCTGCTTTGTCTTGGTTTTTTTTGTTTGTTTGTTTTGTTTTGTTTTTGCTTTTTGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCTTGTCTTGTTTTCTAAGAGTTGTCCCAGTTAATACTCCCAGTAACTATAGTGAGTGCTGCAGCCGAGTGGTTTCTAATGACAGTTTCTTCTCTAG
Seq C2 exon
ACAAAGAGTGCTGTCGAAAAGTTCACTGATGCCAAGAGAAATTTATTACAAACTGAGTCAGACGCTGAGGCATTAGAAAAGAGAGCCCAGGAGACTGCACTTAACCTTGTGAAAGCAGAGCAGCAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]