GgaINT0126674 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9069148-9069502:+
Coord C1 exon
chr17:9069148-9069340
Coord A exon
chr17:9069341-9069422
Coord C2 exon
chr17:9069423-9069502
Length
82 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AAGGTGTTTACTTTTTTTTGTCT
3' ss Score
-3.93
Exon sequences
Seq C1 exon
GGACTTCATTGAAGGGTATACTGAAAATTTAATGGCAGAACTACAGTTAGAAAAATCTCTTAAGCATCATGAAGATGTTGCAGAAGAAATTGAATGTATAGAGAAGACTCTTCTGAAACGCCGAGCAGAGCTTAGAGAGGCAGATAGGCTTCTTGCAGAAGCTGAAGTGGAACTTGAGAGCACACGGGGAAAG
Seq A exon
GTAAGGAAAGCCCATAACTAAATGCAGATGGATTTCTGTGTTATGTTGATTGTTTTAGGCAGAAGGTGTTTACTTTTTTTTG
Seq C2 exon
TCTAAGCAGTTTATTTTTACATGGATAGCCCGCAGCCTCTTAAAAATGCTTCTGTTTGAAAATAAGCCCTGGGATAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTTCTGAAACGCCGAGC
R:
AGGTTATCCCAGGGCTTATTTTCA
Band lengths:
168-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]