DreINT0007352 @ danRer10
Intron Retention
Gene
ENSDARG00000031678 | COL5A2 (2 of 2)
Description
collagen, type V, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2210]
Coordinates
chr9:42871713-42872063:-
Coord C1 exon
chr9:42871845-42872063
Coord A exon
chr9:42871730-42871844
Coord C2 exon
chr9:42871713-42871729
Length
115 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GTTATGTTTCTTCTTGTCAGGAG
3' ss Score
6.6
Exon sequences
Seq C1 exon
AGGATGAGTTGAGCTGTACAGAGAACGGGCAGGTGTACACAAACAGAGACATCTGGAAACCTGAGCCATGCAGGATCTGTGTTTGTGACAGTGGAACCATCCTGTGCGATGAGGTACAATGTGATGAGGTGTCGAACTGTGCAAAGGTAGTGATCCCACCGGGAGAGTGCTGTCCGGTCTGCCAGGGCGATGCAGCTGAAGGTGGCAATGGCAGACCAG
Seq A exon
GTGAGACTGCACCAGAATAAACCTTCAAAACAGATGAAAATTTGGTTTTAATCATCATGTAAATCTGCAGTGGTGTGAATTTTAAGTTTTTGTCTGTTATGTTTCTTCTTGTCAG
Seq C2 exon
GAGGCAGAATCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031678:ENSDART00000144744:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=76.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]