DreINT0007587 @ danRer10
Intron Retention
Gene
ENSDARG00000062758 | CR352265.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QV82]
Coordinates
chr24:21671268-21673622:-
Coord C1 exon
chr24:21673439-21673622
Coord A exon
chr24:21671540-21673438
Coord C2 exon
chr24:21671268-21671539
Length
1899 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
3' ss Seq
GTTTGCTGATGTTTTGTCAGGTA
3' ss Score
7.03
Exon sequences
Seq C1 exon
GTTGTGGCACGAGGCCCAGGAAGCGGGCGAAGATTGTGGGTGGCACAGATGCGCAGGCAGGCTCATGGCCGTGGCAGGTCAGCCTTCAGATGGAGCGGTATGGTCATGTGTGTGGAGCTTCTCTGGTGGCCAGTCGCTGGCTCGTGTCTGCTGCTCACTGCTTTCAGGACTCTGATGCCATCAA
Seq A exon
GTGAGGATTCATTCTGGCACACATGCACAACTCTTCAGATATTTGGCATCACTTTGCCCTTTTTAAAAAAAGAAAATACAAATAAATAGAAGTTAATTTTTTTTGTAATGTGAGGCATATCTGAGTGAAAACACTTCTCAAACAATAAATCATGTAGAAAGAAAGAGTTTGTTCATCAAAAATGGATTGGATCTGGATCAGAGGGGTGCCAAGTTTGAGCACTTACTCTGAACCCCCTTGCTCTGCGTTGGTTGGAGAAATTTCAAATTGAACCAAAACAAATTATAACAATTGGCTTAAGATTGGCAATAGAAATTCAGGATTTTGTAACTCTCTTTTTGGAAATAAAAAGAGATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAACAAACAAACAAACAAACAAATAAATAAATAAATAAATAAAAAGGAAAATGGATTGGATCTTTGTTTTGTTAAAATGAATTTTAAAATGATACATCAAAAAAATAAACATTCTATTAAAAATGACAGTTTTGAGATTATTTTATTCAGTAAGGAGAATTAAGTTGATCAAAAGTGACAGAAAACTGATTGTCTTTGCAAACAAATGCAAAAATATTTTCTTATTGTTATAATAATAAATGTTTCTTTTGCATCAAATCCGCATACAGTATTATAATGATTTCTGAAGGATCATTTGACAATAAAGACGCAATGTAATTATAAAAAAATTCAGCTTTACCGTCACATAAATAAATGACTTTAAAAGAAAATATAAAACAATTAAATTATATTAACATAATCAATAATATAATTTTATTTTAATATAAGTAATTTTAACCTTATAAATTGGTGATGTAGTTCATAAAAGCTGGTGAGTATTTATGTTATTGAATAAAATTTTATTATTTAACTTTTATTTATAATTTTATTTATTTATTTATTTAAAATAAATTTTTTTATCATTTTTATCTTTATTGTTTTTATTTTATTTTTATTTATTTATTTTATTGTTTTTATTTGATTGTGTTTTTATTTATTTTATTTTATTATTTATTTTTTATATTGTTTTAGAATTTTATTTTATTATTTATTTTAATTTATTTTTATCTTTTATTATTTATTTATTTGTGTATTTATTTATTTTATTTCATTAGATTTTTTATTGGATTTATTGTTTTTATTTTATTTTTTTAATTTTATTTTATTCTTTATTATTTTATTGCCACAGAAAAATGAACTACCGATTTCTCTGGTATATGTTATATTCGGCAGAACTTCTTGCTGTGAGGAGACAGTGCTAACCACTACGCCACCTTACCGCCCATTATTTTATTTTATTTTTTATTTTTTTCTTAGAGTTGCAAGCTGTTTTTAAATTAGCTGGCCTTAACTACTATTTAATTATCCATTATATAATTTGGTTCAATTTATTATATTATCTAATACATTAGGATACAATATACTTATTATGTACATGCACAATAATACATTGTATTTAAATTTCATCCTAACCTTACTCCTAAACCTATCCAAACCTTGAGCAGTTGCACTTCATTTTACAGTGTTTATTTAAAATGTACTTAAGAAAGAAAGTACTGGATTATACAAGGGAACCACATGCCCTAAAATAAGATTCAGGGATAGTACCTAGTTATTATTACCCAGTTTATTTGTTAAGTATATAGTATGTATATGCAAAACAGAACGCTAAATTGAAATACTAATTAAATACTAATAAAATACCTCAAACACATTCACAATAAAAGGGATATGTTACAAATTAACTTATAGTTACTCAATAAACCCATAATCTTGTGAGAAATTAATGCTAGAAACATTATACAAATTCTGACCGTATCTGTTGTTGCACAAACTATGTATGAAGTGTTTGCTGATGTTTTGTCAG
Seq C2 exon
GTACTCTGATGCGCGCTCGTGGAGGGCCTACATGGGAATGCGAGTGATGAACTCAGTCAGTAACGCAGCAGCGACCAGACAAATCCGCCGCATCGTCCTGCATTCGCAATACGATCAGTTTACCTCAGACTATGACATTGCCCTGCTGGAACTGAGCGCTCCAGTGTTTTTCAATGAGCTGGTCCAGCCGGTCTGTGTACCGGCCCCATCCCACGTCTTCACCTCCGGAACCAGCTGCTTCGTCACTGGATGGGGAGTCCTGACTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062758:ENSDART00000091096:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.4=80.6)
A:
NA
C2:
PF0008921=Trypsin=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGGAGCTTCTCTGGTG
R:
TTCAGTCAGGACTCCCCATCC
Band lengths:
345-2244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]