DreINT0008054 @ danRer10
Intron Retention
Gene
ENSDARG00000016545 | CRAT (1 of 2)
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]
Coordinates
chr8:44973843-44974125:+
Coord C1 exon
chr8:44973843-44973978
Coord A exon
chr8:44973979-44974062
Coord C2 exon
chr8:44974063-44974125
Length
84 bp
Sequences
Splice sites
5' ss Seq
AATGTACTG
5' ss Score
-2.53
3' ss Seq
ATATTCTTTGACATTTGCAGAAT
3' ss Score
8.62
Exon sequences
Seq C1 exon
GATGTATGAGACATGCTGTCCATCCTACGAGAGTGCATCTTTACGCATGTTTAAACTGGGCAGAACAGAAGCCATTCGATCCACCACCACAGAATCGTTGCAGTTCACAAAAGCCATGGATGATCCATCAAAAAAT
Seq A exon
GTACTGGTTTCAATTTCAGTATTGACATGTTTTAGAAGTTTTGAGAATTGCTCATGTTGTTTTCATATTCTTTGACATTTGCAG
Seq C2 exon
AATATTGAGAAAGCAGCACTGCTCAAAAATGCGATTAAAGTCCACAGAGAGCTCACATACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016545:ENSDART00000098567:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(7.7=100)
A:
NA
C2:
PF0075515=Carn_acyltransf=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAGTGCATCTTTACGCA
R:
TGTGAGCTCTCTGTGGACTTT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]