DreINT0008208 @ danRer10
Intron Retention
Gene
ENSDARG00000077920 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr19:44533877-44536208:-
Coord C1 exon
chr19:44536096-44536208
Coord A exon
chr19:44533965-44536095
Coord C2 exon
chr19:44533877-44533964
Length
2131 bp
Sequences
Splice sites
5' ss Seq
TTTGTACGT
5' ss Score
3.25
3' ss Seq
TTTGTGTTGTTCTCTGTCAGGTG
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTGTCTATAAGAGCCAGGAAGCTCGTCTGATGCTGCTGGTGTATCATGTGAAAGCCTCCTCATCCTCCACACTCAGCAAGATCAAAGAAGAGCACTGGACCCTCGACGGATTT
Seq A exon
GTACGTCCACATGCGTCTCATTGCGCTGCTTTTGTCTTTTTGGGTTTCTTTTGGTGCGGAATAAAATGTGAAGTTCAGTAGTGGATGAGGAACGTGATGAAATAACACTGTAGTAGATGTAGAAGTAGGAATGTTTACTTGAGTGGAAGTACAAAAGTAATGTTATTTATAATAATAGTAATAATACACTGAAAAAATTATTCATTGGATATTTAATGTTTACAAGGTCAGTGGTTGCAAGCAATTGATTAGGGCTGAATTTAAACAAACAAATTAAATTCTGCAAAGTTCAGCCTAATTTGTTTTGTTTAAATTCAGCCCATTCTCCCCTTGTTCGCGTGGTGGTGCTCCAGTTTTCCCCACAAGTCCAAAAACTTGGTACAGGTAAATTGGGTATGCCAAAATTGATCAAGTAGTGTGTGTGTGAATGTTTCCCAGTGATGGGTTGTGTTGCATTTAGTAAATACAGTGAATCCTTTCTTTTCAGTGTACAAAGAAGAAGAATTAAACTTGCTTAAAGAATTAAATTGCTTTTAAAAAGCAAATATACAGATGTGATTTTATAGGCAAAGAAAGCACATTAAATGCAGGTTTCAAAAATGTTTTGTAAAATTAAAGTTCAAAATGTGCATGAAATAATCTTCTGTTGGCATTGAGAATAACAGGTTTATGTAAACATTAAAGATATTAATTATAGACTTACTACTAAAATATACACAATAAGTGATCATGCTAATAAAATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAGTATAATATAATATAATATAATACAATATAATATTCTAATATAATATAATACAATATAATATTATAATGTAATCTAATGTAATCTAATCTAATGTAATATAATATAATATAATAATATATAATACAATATATAATCTAATCTAATATAATACAATACAATATAATATAATATAAAATAATATAATATAATATAATATTATATAATATAATATATATGCGTGCGTGTGTGTTTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATCTGCTCTGTCGACTTTTGGTGTTGAAAATTCAACTCTAAAGCTTAACACTGACTTTTGTTGACATTTTAGTAGTTTGAAATGATATAATGCATAAGAAGTAGCAGGCCTGTTAGCCAAGGTCCAGATTTGGTCCCATACACAAGCTCATTTGTCCTATTTTCACTGCTTTTCCATAATAAATTGTAAAAAAAAAAAAAAAAAAAAAAAACATTTGAGAAGGCTATAAGACCAAGCAGAATTCTGTGTGCGCGGTCGCTTCGGTGTGTCTGAGGAAAGTTGAATGTGCTGGCAAGTTTGTGTTTGCCTAATGAATGACAATAGGCTAGTTTTTAATATAAAATTTGATCAGACTCCTATTTTTTATAATCATATATGATTATATGAAATTGTATTTGAGAAATAAGTATCGTTCTCATATTTGTTTTCTTCTAAATTTTTTATATGCTTTTCATACATCAAAAAGTGTGGTTATGATGACCATCCAACTAACTAATCCAGCCAAAAATACTGCTTAAAATGTCACTAAAATGCCGTACTTGCCGAAAATTAGGCGAATGACTGCAAAAAGGTCCACTTTCTAAGAAAATAGAGCCATTCCTTTCATTACACTGACTGTATAGAGAAAATAAGTCTGTAAAAAACAGAAAATGTACTGGCAGTTTATTATAAGGTTTTTGTACTGTATTATACCAATTTAAACTATTAAAAATGTTCATAAAAGTCATATTTAGAGTTTAATCAGTAGTTTGTAGTTCACCACATTAATAACATCTGTAGAATTGACAAATGAATCATTAAATGTGATTTGTGAAGCAGTTAAAGATGATTAGCTTAATAATCAAACATCAGTACTATTAAAAATAATAATAATAATAGCAAATTAATTATCATTTTAAAAATAAACAAAAAGTGATCAAATGTAGGGTTGGTTATGTTAATGCAGAAAGATATTTGATGATTTGGACAATTCTGCTGTCAGTGTATCTCACAGGTTAATTTTGTTTGTGTTGTTCTCTGTCAG
Seq C2 exon
GTGTCTGCTGAACCTGATGGCTCCACATATGTCTTTCAAGGCTTTATACAGGGTAAAGACTACGGCCAGTTTGGCCTGCAAAGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077920:ENSDART00000108507:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]