DreINT0008373 @ danRer10
Intron Retention
Gene
ENSDARG00000103129 | CU207219.1
Description
NA
Coordinates
chr11:44338664-44339890:+
Coord C1 exon
chr11:44338664-44338776
Coord A exon
chr11:44338777-44339272
Coord C2 exon
chr11:44339273-44339890
Length
496 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
CACATGACTGTAATCCGCAGGTG
3' ss Score
7.88
Exon sequences
Seq C1 exon
AGAAGCAGTGGTCGCTCTGGACCGTCATGATGGGATGGAGCTGGAGGAATTTCTTCCTCAGAGACGTTCACGTACATACGGCATCGCCATCACTTACCCACAATGCCCTGCAG
Seq A exon
GTCTGAGCTCAGATTTATTGCATCACAAACATTAAAGTTCAGTTCACGTTTATTTGTAAAGTGCTTTTGCCCCATTGACTTCCATTATAATCACATTTATTGATTGCAAATCCGTGACAGCAGATAATCCTGGATTCTTGATTGTTGCTGGTTTTCCCTGTTGGGACAAGGGGCAATGTGTCATTTTACTGTTGATCATCAGTCAGCAGTGTGAAGTGTTTTATATGGAGTTTAGTGGAGTAAATCAGCAGCATATAGTGTATGTGCAGAAATACACTGACTGTGTTTACTGGGTTTATTTAGATTTTCTCAGACATATCAAGATAAGTATGCAAAGGTCTCACTATTTGAAAAACAGCAACAATCAAGAATGCATGATTATATGCTGTCATGGCTTTCACAATAAAATTGTGAATATAATGGAAGTCAATTGGGCGTAAACAGCACCAACATTTGAACAATACACATGAGTTAATCACATGACTGTAATCCGCAG
Seq C2 exon
GTGGAAACTACTGCTCTCGCGATAATGGAGGCTGTTCTCATTTATGTCTGCCACATCCGGGTGGATTCACCTGCCGCTGTCCCGACGCCAGTGATGCTTCATGTGTCGAAGATGACCAAAACTTCTGAGAACCGAACAGCAGCTCCGTCCCGTCAGGAGGACACAATCAGTACAGTGAGGGAGACTAGAGATTCTAATCTGCCAATAGCAGTGTTTTGCGCTATTGTATTGTTACGTTATTGTTCGTTGTGGTTACTAAGAGACGTCGATCAAATCAGGGATTCCTTTTCCTTAAAATCTTTCAAAAGTACTAAACTGTATGGAAGCTTGTTTCGATCATGGAAGAAAAAACGTAATTGTAAATTCGTAACTCTTTCCTACATTTATAGATTTATATCTTATTAATTTATATCTAGCAATGCTGACTTTTTTCGCTATTACGAATTAATATCTTTCGACTTTTTTCGCAAGTATTTTTTTATATCTTACAATTCTGACATTTTTACAATTACAAGTTTATACCTTGCGCAATTATTACTTTTTTCGCAATTACAAGTTTATATTTTGCAATTCTGACGTTTTTTTTCAATTATGAGTTTTTATATTGCAACTATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103129:ENSDART00000168209:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=76.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATGGAGCTGGAGGAATT
R:
TCGACGTCTCTTAGTAACCACA
Band lengths:
352-848
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]