GgaINT0079712 @ galGal4
Intron Retention
Gene
ENSGALG00000010982 | NID1
Description
nidogen 1 [Source:HGNC Symbol;Acc:HGNC:7821]
Coordinates
chr3:37211681-37213970:+
Coord C1 exon
chr3:37211681-37211793
Coord A exon
chr3:37211794-37213848
Coord C2 exon
chr3:37213849-37213970
Length
2055 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
CTTCATCTCTTCTTTTTCAGGAC
3' ss Score
12.22
Exon sequences
Seq C1 exon
GGATGCTGTTGTAGCTGTGGATCGCATGATTTCAGTAGAAAATGATAACTTCCAACCTCACAAGCGCTCCCGTCTCTATGGAATCACTACAGCTTTTGCTCAGTGCCCAGGAG
Seq A exon
GTAATACAGATGATCCTCAAGCTTTTCCAGCTGTGCGGCATCTTAGTGCATGAATGAACTTAGCCCTTCAGTGAGAGCTGTTACTGCCACCTGATGTAGGTGGTTAGTGAAGGTCTGGTTATTGCTTAGATTTCAGTCTTCAGAGAAATTAAAAATTAGAATTTTTTTTTCCAACCAGAATAGGCAAAGGTTGAGCCAGCAGTGTGCCCAGGTTGGCCAAGAAGGCCAGTGGCATCCTGGCTTGTATCAGGAACGGTGTGGTGAGCAGGACTAGGGAAGTCATCCTGCCCCTGTACTTGGCATTGGTGGGGCGTCACCTTGAGTACTGTGTTCAGTTTTGGGCACCTCAGTACAAAAAGGACATGGAGGTACTGGAGCAGGTCCAGAGAAGGACAACGAGGCTAGTGAAGGGCTTGGAAAATCAGCCCTATGAGGAGAGGCTGAGGGAGCTGGGGCTGTTTAGTGTGGGGAAGAGGAGGCTGAGGGGAGACCTTATTACTCTCTTCCAGTACCTGAAAGGTATGTGTTTACAGTGAGAGCAGGGTAGGTCTCTTCTCACTGGTGACAAGACGAGGGGAAATGTCCTCAAGTTGCGCCAAGGCAAGTTTAGGTTGGACGTTAGGAAATTCTTCTTTACAGAAAGGGTGGTTAAGCACTGGAATAGGCTCCCCAGGGAGGTGGTTGAGTCACCGTCCCTGGATGTGTTTAAGAGCCGTTTGGATGTGGTGTTCAGAGATATGACTTAGCAGAGGGTTGTTAGAGTTAGGGTACTATGATTAGGCTGCAGTTGGACTTGATGATCTTTGAGGTCCTTTTCAACCTGAGTAATTCTATGATTCGACATGGCTAAAGCTGCTGTCTTGTCAGTATCTAAATTGAATCCTACACTTATGGCTAGGGCCTTACTTACTCATTTTTAACTTCAAACTATAGAAAAAATGGTCTTCCAGATGTCCTTAATGAGATCCAGTGTCTTTAAAATGGGAATGTTCAAAAAACAGCAGTTGGCAGAGTGGGTGGACTGATCTTTCTGCTCTGTTGAATGTTAAGCTTTTCAGATACGTTACTGAAAAGCCCCCTGTGAAACTTAGAAGAGAGAAAGCTGATAGCCTTGAAATAAGTTTACTCTTTGGGAAGCAATACCACTGTCCAGTTACATTCTTCTTTCCAATTCACTGTTATGAGACGAGTTCTCTTTTTTATTATTACTATGTGGCTGGATTTATAATTGTGTTGTTTTAACTTCAGGCCTAAAAAAAACCCTAAATAGAGTATCTGCTCAAGTTATTCAATACATACAGTAAAAACATAATTGCATGTCTGGTTCAGGGCATTAAAATATGCATATGAATTTCATAACTAAGAAAACAGATATTTTATTCCTAGTAGTTAATTAATTAGTTGGTTAACTAGTTAACTTGATAATGTTAACTACTAGTTAATAATTGATACTTCCATTCTGATAAGCACTGTATAACAAAACAACAGTCTGTGCTCTAACTAGAAGATTATATTTGTCATTTTAGGAACCTTGACGTTATTTTTTTTTCTTATTTACTTCAAATGTTTGTCTCTGACTAATGTCTTTCTCCTCAAATCCATTGCTTTGGGCACTCCTTCATCTTTCATTTTACCCCTCAGTGTTAATGCATTCCTTCCTACACACCCTATTTTTGTGTTTTTGCTAGTCATTCCTCAGAGTTTTTCTAGTGGGAAGTTGGGAATGAAGTCCTGTACCATTTTGAATTTGGTCTTCATTTGATACATTTTGCATTTTCTTACCTTCTCATCATTCTAATGTCTGTGACTACTCAGCCAATTTATGAAGTACATTTCTGGGCATATTTTTTTAATGTTGCCTGTCCTGCTCTGTCCTGATATCTGGATCTTTCCTTGAGGTGAATATCAGAAGCAGGGATCTGATGACTTTGATCTCCCCAACATGTTTGTTTCCCTGGTGTAGTCATGAAATCTGCACATTTTACACATGTGTTTGGATTTTATTGTGGGTTTGCTTTTGCTTTCCTTCAACATTCTTCATCTCTTCTTTTTCAG
Seq C2 exon
GACATAACTACTGTACAGTGAATAATGGTGGTTGTACTCACCTCTGCTTGGCTACGCCAGAAGGCCGCTCTTGCCGCTGCCCTGACAACACAGTTGGAGTGGATTGTATAGAAAGAAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010982:ENSGALT00000017890:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=75.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]