DreINT0009100 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27723843-27726289:+
Coord C1 exon
chr5:27723843-27723999
Coord A exon
chr5:27724000-27725809
Coord C2 exon
chr5:27725810-27726289
Length
1810 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CTCCATTTGTATATTTTTAGAGG
3' ss Score
5.73
Exon sequences
Seq C1 exon
GAATATTCAAGCCTTTAACACAGCACTGATGGGCAATACTCCACTCTTCCAAATCGATACCATCCTAGCTGCTCCAGAGATTGCTTTGCTTCCTAAGAGCAGTGAAGTCTACAAGCTTATTAGGCAGTGTGTCGGTGACTGTGTGGAGACGACTAAG
Seq A exon
GTATGTTCCATCTTTCGGATAAGACAATAAACCGAGGTCCTGACTCTCTGTGGTCATTAAAAATTCCATGGCACTTCTTGTAAAGAGTAGGGGGGTAACTCCAGTGTCCTGGCCAAATTTCTTCTATCGGCCCTTACCCATCATGGTCTCTCCACTGACATGGTTGAGCTTTATTTTACACTATAGGCATTTTAAGGTCTCATTTAATAAAGTACTGGGCAAAGTAAGGAATCTAGATGTCTTAAACTTTAGGGGAGGGTTCAGCGTTAGTGCTTTGTTATTACTTAGTCACTGTAATTAATTAAATAAGTATATACTGTAGTATACACATGCAGAACTAAACTGAAAAATAAACTACCAATGACAAAATGACTTCAAATATCAGCTTAGAAAAAACAATAGATTCTTTATTCAGTGTTGATATAGTTTAGTTCAATTAATATAATGTTTTCAGTAATGAAACAAGTTATAAAACTGTTTCAATTTAGCTATGAACAATATTCTGTAGGGATAATTACAGGTTGAACCCAAAAATGACCAGTCTTTCAGATGAAGCAGAGTCAGATAGTCAATTAACGAAAGTTTACTGAAGATAGTTTGCAGTTTTATCAGCAGAAGCCAGCTTTAACACTCGCAATGAGTTTGTAGGCCGGTTTGCTTACAATCTTAAAACAACACCAGTTATACTCTTACATAATGTCAATAACTGTGTCATGCATATAAGTGTTTTGACCTGATTTAACCTATCTGTGTTTTAGAAGTTTTTTTTTTTTTTTAGAAAATTTCCATGTGGGTGTGTGCGTACAACTCTGAACGACACCTCAATATCTCAAGCATACAAATATCAGATACAAATATCCTCTAGCCCAAGGGTTACCAATCCTGGTCCTATTGGGCCAGTGTCCCTGCAGGGTTCAGCTCCATCTTGCCTCAACACACCTCCCTGGATGTTTCAAGTATACCTTGTAAGACCTTAATTAGCTTGTTCAGGTGTGTTTGATTAGGGTTGGAGCTAAAATCTGCAGGACACTGGCCCTCCAGGAACTAGTTTGGTGACCACTGCTCTACCCTGTTTAGAGCTGACCCCAGACCTGTAAAAGGATTTACAATCAAATAGAAAGAAAAATCAAGAAAACAAATCCTTTGGTATAAAGAAAAGCAATCACACACTAAGGTCATCATATAATCTGGCCTCTTAAACATTCTATATATTAATAATCATAGTCATAAGAAAGGACATGTGTTACTCCACCCTGGAGCGGACATCCATTAGAAAATCCATGCTATTAATTCTTCTGACTATGAAAGTGAAAGTCATGATGTGGTAACTCATACTCTGAATTTGTCCAAGTACACACACACACACACACACACACACAAATTAATAGGCAGCTATTGCTGCGGCATCCAGGAAACAGTTGTGGGATCTGTGCCATGTTTGAGGGACTTACCTCAGCCATGGTATTTAGGGTGGTGAGAGCGCTGGTTATTCACTCTCGTCACCTACAACATAATCTGTGCAGGTGCCAGGACTCAAACCTTGTGACCTTTCAATCAGAAGTCCAACTCTCTAACCCTTAGGCCATAGCTTTCACCTATTCAGTGTTGATTCAGTTCAGTTCAATAATGTAAAGATTTCAGTTATGAAACAAATTGTGGTTCAAATGAATCACCTATGATGTATTTAAATGGCAACTTAATGTAGTGAATTAGAAAAAAAAAATGTTGACGGATCTAGTAAAATTTTAGTACAAAATAAATCATTGGTAACTTAATTAGTAATTAGCTTCCTCCATTTGTATATTTTTAG
Seq C2 exon
AGGTTTGTTCGCTGGATGCATGGCAGCTGCATTCAATGCCCTCCACAGCACGTGGATGGAGAAGACGAATCATTCCTCTTCACTTTTTACAGTGACATTTGCCAGCTTCCACAGATAAATGAGCAAGCCACAGCTGTATCCCAGACAATACAACGTCTCCTTAATGGAATCAGTGTCTACCTCAAATCCTGGATGAGCTACCGCTCTCTCTGGAAACTCGACAAGGCTATTGTCATGGAGAAGTTTGCAGCCAAGAAGCCATCGTGCGTGATGTATGATGAGAAGTTTCAGTTCTATGTCAAGGTCAGCAATGAGGTGGCAAAGCAGCCCATGGTGAAGCATGAACACATAATCAGACTAAATCTGGAACCTCTGGCACGTGCCGTCCAGGAGAACATTCAAGTGTGGGTCACCTCTCTGGGAAAGCTACTCAATGACTCGGCCCGAGAGGAGCTTTTTAACTTGCGCAATGAGCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTAGCTGCTCCAGAGATTGC
R:
ATGGCTTCTTGGCTGCAAACT
Band lengths:
356-2166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]