GgaINT0008926 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4939556-4940878:-
Coord C1 exon
chr15:4940722-4940878
Coord A exon
chr15:4940033-4940721
Coord C2 exon
chr15:4939556-4940032
Length
689 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
ACCTGTCTTGAAAACCCTAGCAT
3' ss Score
3.66
Exon sequences
Seq C1 exon
GAATTTGCAAGCTTTTAATGCAGCTGTTCTTGCAAATGTGCCACTCTTCCAAATAGAAGCTGTTTTGTCTCCTCCAAAGTTTATCTTGCTACCCAATGCCTGTGAAATTGAGAAAATGGCAGGACAATGTATTCGAGACTGTGTTGAGGTCACAAAG
Seq A exon
GTGATTTTTGATTAAGATTTACTTGTTGCCTTATTTTGCTTGTGATTACATTGAATTAATCTTACTTTATGTTTGGGCAAGAGTTAATATCAAAGGGAAGATTAATAATGATTTATTGTGAAATAAAAATATCCAGTACATTGTTCTAATTTTAAACTGTCCTAATTGTGCAAGCTGATGACTCAGGAAAGAAATCACCATAAAGCTTTATGCAATTTTTACTCAGGTAACATGATTTTCTCTCTCAGTGCTTGTCACTCAGTGGAGATGTAAAAAAAAATAGACTTAAAGATGGAAAGATTTTATTAGGATGAAATTATCTCTTCTCTCAAGTGTTTGGGAAAATATAACCCAGGGGTATGCAAACTTTTGGCTTGGCTAGGCTGCTCTGAGCAAGGAGGAGTTGTCTTGGGCAACATAGAAAATGTATAATATAGTTAATGTATATAACTAACAAAATTTCTCCTATTTTTTAATATTCTTTATTAAAACATAAAAAAGAGGGCAACGAAAACATAAAACTAGCAGGTTGAACATGTATGAAATAACTTCATGCTTTGAGAAAAACAGTTGTTTCAAGAAATCATTCACATTACTTTGTACGTAGTCTCCTAAAAGACTATGAATTATTTGACTAATGTGACTGTCTACAAGGTAATTATTTTTCAAACCTGTCTTGAAAACCCTAG
Seq C2 exon
CATTTTGTGCGGTGGATGCATGGCACGTGTATTGAATGCCCTCCTCAGCGTGTTACAGAAGGTGAAGTTATCACATTCAGCTTTTACAGTGATATCTCCCAGAACCCTCTGATAACTGAGCAGGCTGCTCTCATCACTCAGAATGTCCACAGAGTCCTGACTTCTCTCAGCACGTACTTGAACCACTGGGAGAGATATTGTTTTCTGTGGACAGTGGACAAAGATGTGACCATACAGAAGCTTGCTGCTGAAGAGCCTTCCTATGTCACCTTCGATGAAAAGTTGCAGTTCTATGTGAAGGTAGCTCAAGAAGTCACTCAACAGCCCTTGATAAAAGATGAACAATTTATCAGGCTTTGTCTGAGTTCTTTAGTTCCTGCAGTGGAGGATAAAGCTAAGGATTGGATGATTTCCCTTGGAAAGTTGCTTAATGAGTTTGCAAGAAAGGAACTTTTCAGTCTTCAGGAGGAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCTACCCAATGCCTGTGA
R:
TCGAAGGTGACATAGGAAGGCT
Band lengths:
348-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]