DreINT0009116 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27738023-27740300:+
Coord C1 exon
chr5:27738023-27738211
Coord A exon
chr5:27738212-27740153
Coord C2 exon
chr5:27740154-27740300
Length
1942 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CATCAATGGTTTACATGCAGGTT
3' ss Score
6.23
Exon sequences
Seq C1 exon
TTTGAAGGTCAAGAAATCAGTCTGGACAACCGCATTGGGATTTTCATCACAATGAACCCAGGTTATGCCGGCCGCACAGAACTTCCAGAGTCAGTGAAAGCTTTATTCAGACCAGTGGTTGTCATCGTTCCTGACCTGCAGCAGATTTGTGAGATCATGCTCTTCTCTGAAGGCTTCCTTGTGGCTAAG
Seq A exon
GTAAACATTAACATTCATTAAGTCAGTGTTTCTCAACCATGTTCCTGGAGGCACATGTACATATTTTGGATGTCTCCCTTATCTGATCCATTCATTTCAGGTTTTGGAGTCTCTTCTAATGTTCTGATGAGTTGATTCAGGTGTGTTTGATTAGGAAAGCAGGGCTTGAAATTAACCTTTTTTCTTGGTAGCACCGGTGCTCCTAACTTAAAAAAATTACGCTCACCAGACAAAATTTAGTTGCACCCACCAAAAATTATGAGCACCGTTTCTACACGTTTTATATTAACAGATTATATTATATATTAACTCTCTAATCAATCACCACTAACAAATAAACAAAAATCTGCATGCGCTCAGCAGCCCTGCAAGCACTGCTTGACGAGAACTGAATTAACAATAATAACTGTGCTGTTCTCACGGGTGTTGTCTGATAATGCACAGATGATATTGACATGTAACTTATTATTTGCATACGTCATCTTAATAGCAATAACGGTCTTTTCATGAGCTGCAATGTTAGTTTTATCTGGGTGAATGCATGTTCTTTAGCAATGGTGAACGCGGTGTCAGTTGAATGAATATTACACTGCGATTATTCCACCTCATACCCTGCCAATTAAAATTGCAGCGTACATCAGTGACATTTTCTTTTAAGTGTGTTTCTAAGTGCAAGGTATAATTTATATACTGTTCATGGACCATAAATGTAAAATGTAAGATTAATTTAATGTATGAACACATTACATTAGTATATGCATCTATAATAAGCCAACAGAAAGCGGGTTGATGCATTTATATGCAGAGCAAAACCTGTGTAACCAAAAAATCGAATAAAATTAGAGGCAAAAATTGAGCTGTGACAGTATGTTAATTCTTATGATACACTTTGGAAACTTGAACGCGGTGTCAGTTGCACGACTGACAGCATCGTGAAGAATAAATGAAGGATTAAATAACGTTAAAACATCTCGTGCTTAAAATGTGTAGATTCAGTGGCAAACACTGTTACCTGAAAACTCTGTTCCACTGCCTTTACGGTGAATGGCTTTAGTCATTTTCATAGCAGACTTTAAACACTGGAAGTCTTTTATCCACTCTTCGAAAAGTGTAAATGCTGGATTGACATTCATTACATGATCACTACTCAGATGTGCCATTATTTGTAACTTTAGGTGGTTTCTGAAACTAAATCAGTCAGTGTTGTTTTTTATTCTCTTGTATCCAGACCTTTACATTTTCGTGGCTGTAGCTCCCTGTCATCGGAACTGATTGATTGACAGCTGATATTAACCAATCCATTCGCGTTCTGTTCTAGCGCAGTGGGCAAATAAGAAGAGCTTAAAGGCGGGGCAGGCATTGCGGGCTTTGTTGACTGCAGCAAGTTGACATGTCTACTCTTTTAAACCATTCCTGAGCACTTCGTTTGGTGTTTTAGGTGCAAAGATGCCTAATGCTTAAATGCTTCCTAATTCCGCACATGTGATGACCATTTTGCGGTGAAAACTGGTCGCATGACATCTTTTTTATACACTCGCACAAATGCTCCCAAATATATTTTGAGGTCGCATAGATAAAATTTCAGGCGCATATGCGACCAAAGTGGTTGCAATTTCGAGCCCTGGAAGAGGTTGAAAATGTGTAGTGTTGGTGTGCCTTTAGCAACAGGCTTGGGAAACACGAAAGTTATTGTAATTTTCAAAGATGAACATATTAACAAATACTATTACATGCCATTTCCTGTTCATTTAGGTCTAATTATTTTCCAAATGAAATTTTTCCCTCAGTTCTATTATTTTTTTCTTTTTAAAATGTTTTGGATTGTGTTTTAAATGTTTCTGAACCCTATTTTATAAGCAGTTTATTAAGGAATTAATTGTTATTGGAAAATAAGCAAACAACAGACTGTTAACAATAGATTGCATCAATGGTTTACATGCAG
Seq C2 exon
GTTTTGGCAAAGAAGATGACAGTGCTGTACAAACTAGCCCGGGAGCAGCTGTCTAAACAGTCACACTACGACTTTGGTCTTAGAGCACTTAAATCTGTGTTAGTAATGGCAGGGGAGCTGAAGAGAGGTTCTCCTAATCTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.8=100)
A:
NA
C2:
PF127742=AAA_6=PD(19.0=89.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTCAAGAAATCAGTCTGGAC
R:
CTCACTGAGATTAGGAGAACCTCTCT
Band lengths:
334-2276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]