GgaINT0008942 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4931211-4931637:-
Coord C1 exon
chr15:4931449-4931637
Coord A exon
chr15:4931358-4931448
Coord C2 exon
chr15:4931211-4931357
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATTATTTAACTCTCAAACAGGTC
3' ss Score
8.09
Exon sequences
Seq C1 exon
TTTGAAGGACAAGAAATTAACCTTGATAGCCGAATGGGCATTTTTATTACAATGAATCCTGGTTATGCTGGCCGGACTGAACTCCCTGAGTCTGTAAAAGCTTTGTTCAGGCCTGTGGTTGTTATTGTACCAGATCTTCAGCAAATCTGTGAAATCATGCTCTTTTCTGAAGGATTCCTTACAGCAAAG
Seq A exon
GTAAGAAAATTGTATTGCTCTCCATACTCTTGTATGCATGCTCAGTGTTCGGTTGTGACTTCACATTTGTGATTATTTAACTCTCAAACAG
Seq C2 exon
GTCCTTGCCAAAAAGATGACAGTGCTATACAAGCTGGCAAAAGAACAACTTTCTAAACAACATCATTATGATTTTGGACTACGGGCCCTTAAATCAGTGTTGGTGATGGCTGGGGAACTGAAAAGAGGATCACCAGACCTCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.8=100)
A:
NA
C2:
PF127742=AAA_6=PD(19.0=89.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTTTGTTCAGGCCTGTGG
R:
AGGGCCCGTAGTCCAAAATCA
Band lengths:
181-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]