DreINT0009173 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19399946-19402362:-
Coord C1 exon
chr16:19402240-19402362
Coord A exon
chr16:19400125-19402239
Coord C2 exon
chr16:19399946-19400124
Length
2115 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
TTTAGAGCATCTCCATGCAGGAT
3' ss Score
4.32
Exon sequences
Seq C1 exon
GTTCTGCTGATGAGAGGCTTCATTGATGGTGAGGATCTAGAGATTCTGCTAAGGTTTCCTGTAGAGATTTGCGAGAGCAGTCCTGTCAGCTTCCTGTCGCCACAGGCCTGGGGTGCTATTAAG
Seq A exon
GTACGAACCACCTGTGCCTGGACACGTGGTTCGAATTGAGTTATTATTGCTGTTTTGAAAAATGTCCATTTTTAAATCCCTATTTAAGTTAAACAAACTATCCCTATCCCAAACTATAAAGGGACCCCTGTCCTAAAATAGAGAAGGTAGATTTATACTGTTATACAACCATATATATATATATATATATATATATATAGTTGAAGTCAGAATTAATACCCCCAACACATTTTCCAACACATTTATTTTTTCCAACACATTTATAAGCATAATAGATTTAATAACTCATTTCTAATAACTGATTTTAACTTTGCCGTGAAGACAGTAAATAATATTTTACTGGAAAATTTTCAAGACACATCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTGGGTTAACTAGGCAGGTTAGGGTAATTAGGCAAGTTATTGTATCACAATGGCTTGTTCTGTAGATTATTGAAAAAGTATATAGCTTAAAGGGGCTAATAATTTTGTCCTTAAAATGTTTTTTTTTTTTTTTTAATTAAAAACTGCCTTTATTCGTGCCGAAATAAAACAAATAAGACTTTCTCTAGAAGAAACAATATTATCAGACATATTGTGAAAATTTCCTTGCTCTTTTAAACATCATTTAAGAAAGAAAAAAAAATCAAAGGGGGGCTATTATATATACAGACTTCAACTGTATATGTAATTTGTGTCTATAAAAGAAGTAAGAAGCTCATAAAGCTTTAAAACAAGTAAAGGGTGAATAACATGTTAGAAATTTTCCATTTAGATGAACTATACCTTTAAGGGTGATAGTAGAAAATATTAAGTGGGCCCCAAACTGCATAATTATTCATTATTTTATGCAATTTTGTAGTTAAAATAGTGTACGTAATGCATTCACACTTCATTTGTTTTTATCCTGCGTAAACTTAAAAATAACTTTATTTTGCTGCATAAACAATTGTGCATTATGAATGCAGTTGTACTCATGGCATGTACCATTTGTTTGTTTTGATCATTTCACTAGTTTGGCAACTGTTAAAAGTTGACTGGGAAAATGTTGAAATTTCTGTTTAGAAAAAAATAAAAACATTATGTTTTAATTGAGCTAAAACTACCGTAAACTTATACACTACACATGAGTCCATAGTGTGTGTTTGAACAAAAAAGAACAGATTTGGAAGAATGTTAGCTTTTCATTACATGTTTTTCTTTCATATCATGAATGTCAATAGCCCCTTTCACACATACAGACCTTTCGGGGAAATTAGACCTTTCTGGGCATTTTTCAGGACAGTTTTGTATGTGTGAACCGGCCCTTTTTGAAGATACCGGTAAATTTGTTGTTACATTACCGGTAATTTGCTGGAATGCTGCCCTGTGTGAACGTGGAAGGAGAATTGCCGGTAAGAGCATGTTAACGCTTAGAACACGCTGACGTGAAACGTGTACTCCAGCCAATCAGAACATTCAGACACATTCACATCTTCACTGTTTATGGAAATAAAAGTCTTTGAATATTTTGCAGACACAAATTAGCTGCTAGATGTCCTTACTGCCAACTGTGTAACAAAATATTGATAAAATGCTTATGTTAAGCCGTTGTTTGTTTACCTTCAACTTCTGCTTACTTCAGTTGCATGATGCCAGTGCACATGAAGCAGCTGGTGAGCGCCAACACACACATATTATGTACAGTATATCTCGACATACGAATGTGCTCCTCCATATCTTTTCATCGAAGTTGTGCACAATACTTATCCATCCAGAGTTAGTAATGTAGTCAAATGTTTACAAATACAAAAGAAGCCAAGGTCATTTCTGGTTAATGATGTCAGAATTTACTGGTATATTGGAATGGATGTGTGAATGGTCTTGAATGGAATGGAGCAATTCCGGAAAGTCCTTGCCAATATAAACAGCATTTTGTTTAATTTACCGGTAAAGTCGTTCCAGAAATTTTCTGAATATTTTCCAGCATCACTGTGTGAAAAGGTCTAAAGACTACTGGATCCTAACATTCTTCCAAACTGTCACTTTAATTTTAGTTGTATAATACTTAATTTAGTAGCAAAATGTAATTTTGCTTTTAGAGCATCTCCATGCAG
Seq C2 exon
GATGCATTCAGAGGTCTGGACAGGGATGTTGAAGGGTCTGCCAAGCGCTGGAAGAAACTGGTGGAGTCTGAGTGTCCAGAAAGAGAGCGGTTCCCTCAGGACTGGAAGACCAAGAGCCCTCTCCAGAGACTCATCATTCTAAGAGCGATCCGGCCTGACAGGATGACCTATGCTCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(2.8=48.8)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]