DreINT0009178 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19397140-19397925:-
Coord C1 exon
chr16:19397698-19397925
Coord A exon
chr16:19397332-19397697
Coord C2 exon
chr16:19397140-19397331
Length
366 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTTT
5' ss Score
2.08
3' ss Seq
TTGTCTTTTGTGTTTTGCAGGAT
3' ss Score
12.61
Exon sequences
Seq C1 exon
AATATCCACCTGCTATCACAGTGGTTGAGTCGTCTGGAGGAGATGTTGGAGAACACGGCTAGCAATGCTCACTCAAACTACAGAGTGTTCATGAGTGGAGAACCAGCTCCCAATCCACATGAGCATCTAATCCCTCGCACCATCCTGGAGAACTCTCTCAAACTCACCACTGAACCCCCAACTGGCATGAACTCTACCTTACATGCTGCTCTGGACAACTTCAGCAAG
Seq A exon
GTCTTTACACACTTTACTCACAGGCTAACACAATCCATTCATGTTTTGTTTAAATTCATCATTTTGTTGTTGTTCTTAACAGTGAAAACTGCTTATAATTGGGAGTGAATGCACTTAAAACATTTTATGAAAATAGACTTATCACTTGCTCGCCCTGAAGTTATTCCAAACTGGAATGACTTTTGTTCTTCTTCTGAATGAAGAAGAAGTAAATGTTTTAAACTTGCACTGGGTTAAGAACAACTTGAGGATAAGTAAATAAAGACAGAATTTTTATTTCATTTTTTTATTTCTATTATTTATATCAGTAAGAACGTTATGAATTATTCTTAGTTTGTTCTTCATCTTGTCTTTTGTGTTTTGCAG
Seq C2 exon
GATACTCTGGAAATGTGTTCTCGAGAGCAGGAGTTTAAAGGACTCATGTTCTCGCTGTGTTACTTCCATGCCTGTGTGAGTGAGAGGCGGAAGTTTGGACCTCAGGGTTGGAACCACAAATACCCATTCAACAATGGAGATCTGAATATTTCAGCTAATGTTCTGTACAACTACCTGGAGGCCAGTACCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTAGCAATGCTCACTCAA
R:
TGGCCTCCAGGTAGTTGTACA
Band lengths:
357-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]