Special

HsaINT0049362 @ hg19

Intron Retention

Gene
ENSG00000105877 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:2942]
Coordinates
chr7:21912892-21920511:+
Coord C1 exon
chr7:21912892-21913119
Coord A exon
chr7:21913120-21920319
Coord C2 exon
chr7:21920320-21920511
Length
7200 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTCTTCTCTTTTTTCCCAGGAT
3' ss Score
11.18
Exon sequences
Seq C1 exon
AATGTTCATTTGGTAGCCAAGTGGCTAGGAACCTTGGAGAAGCTCCTTGAAAGATTCAGCCAAGGAAGCCACAGAGATTACAGGGTTTTCATGAGTGCTGAGTCTGCACCTACACCAGATGAGCATATCATCCCTCAAGGACTCCTGGAAAATTCCATTAAGATCACTAATGAACCCCCAACAGGGATGCTGGCCAATTTGCATGCCGCCCTGTACAACTTTGATCAG
Seq A exon
GTAAGAAAGCGAAGCAGGCTAGGCAGACAATGAAGTCAGAGTCATCTCACAAGACTGTGGGGCCCAGAATCAACCCAGGCATGTCATTGAGAGGGATGAAGCAAGTTCTTAATGTTCGCATGTGGAAGGGTAGGGGTGGGCGTGTTTTAATCTCTTGAAAGAATTGCCCCTGTCATTTCCGATTCTAATGACCAGTAAATATATTTCAGTCTCACCCTAACATTAAGAAAACTTCAGCTACTGTGTAGGGAAAGCTAACTAGGTAACTTCTTGAGGAGGTTGCTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAATCTCACTTTGCCGCCCAGGCTGGAGTGCAGTGGCATGATCTTGCCTCACTGCAACTTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGTGATTACAGCTGCATACCACCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGACCAGACTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGACATGAGCCACCGCGCCTGGCCGGAACTTGCTTCTTGAAAACAAATGTGGCACACTAGTATCTCTGACCACAGAAAGAGAAGAAGCCATTGTTATTCTTGTTGATGATGGCGACAGTAATGACATGGTAAAAGTTTCAGTGTAGTGTTTTAGCCCGGTTTGATATGAGTAAATTTAAAGGCCTCTTTTTGGGTTATATCTATGACACCTTATTTATATGTTCATGTTTTTCCAAGATAAGACAAATGAATACTTACATGGTTTTTTTTTGTTTTTGGTTTTTTTGAGACAGAGTTTTGCTCTTGTCGCCCAGGCTGGAGTGCAATGACATGATCTTGGCTCACTGCAACCTCAGCCTCCCAGGTTGAAGCGATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGATTACAGGCGCCCACCACCAAGCCCAGCTAACTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTAGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTGTTCACCTTGGCCTCCCAATTCCACCTTGGCTGGAATTACAGGTGTGAGCCACTGCACCTGGCCAAATACATATATAAATTAATACATAAATACATACGTATATATACATATATATACACATATATATGATATATATATGATACCTTTATTACCATTACTCTTTTTACCCAAACTATCCTATCTATCAACATCATTGTCAAGTCTTTCAGTTTCCTTTCTTGCTATTGCTCTGAGATCTTCCTTCCTTCCTCTAATTTTTTGGAAATCCTTGGTAAATCGCATTCTTGTTAGGACAGTAGAATGAACCCTAAAGAGGAAATACATATGATTTGGTGATAAATATTCAGCCCCCTCTTAGAAATATCATTCTCTACGAAGCATGTTAACATCCTTAGCTTCTTTTCTCGTAACTTTTGGGTCAATACGTAAACCAACATTATGAAGGAATTATGATAATTGACTACCTAAGAATACAGTGTTGAAGAATGCAGTTAATTACTTCATTAAATAATTGAGTAATTTTTATCCTATATATACACACAAGATTGTGTAAATAGTAGGACTCAAAAAATCTTTTTGAAACTATTAAGTATCTGCAATATGCCTTATTTAATCCACTATGACAGACATATATGTTTTTTAATCATCTCTTAATTTATAATTTCTGGCTATTTATGACATTTTCAAGCTATTTCCCAAAGTACATACAAAGAGGAATTTGATTTATTTAAATAGGACTTATCTGCCCCCTAAAATAAGTATCTTTATTCATGAAAGTGAACATTTCATGAACAAATATGCTTCAGCCCAATTATCCTTCAGCTTTTTTGTTCGTTTGTTTGTTTTGTTTTTTTGGTAAAGATCACTTCGAGAATCTCATAAAACTGTGGACACTCTCCCCAGGGAAATACACGTTCGAAAATATACTGCACATTGGGCCAGACACAGTGCCTCATGCCTACAATCCCAGCACTTTAGGAGGCTGAGAGGAGGATCACTTGAGCCCAGGAGTTCGAGGCTGCAGTGAGCTATGATCACACCACTGTGCTTCAGCCTGGGCAACAGAGCGAGACACTGTCTCAAAAAATAATAATAAGTGTTAAAAATATGTTGCATATAATGATAAAGATTCACAGATTCCCCCAAAGCCTATGCATGAATTCCCTAGTTAAGAACACCTGTTCTGGTCTTTTCATGAACCTGTCAATTCTTTTGACTGCTATCTGGAAAGCCACTTTTATTAATTGAAGGTTACTTTTATTAGAAGGGCTTTTAGGAACTTCAAGGAAGAATATTTCTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTATCGCCCAGGCTGGAGTGCAGTGGTACGATCTCGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCTGCCACCATGCACGGCTAATTTTTTGAGTTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTTGTGATCTGCCCGCCTCGGCATCCGAAGTGCTGGGATTACAGGCGTGAGCCACCGCACCTGGCCCAAGGAAGAATATTGCTTATTTAGTGGAGAGGATCCTCTGAAATATTAAGACTGAACTTGATGTTAAGTAGCAAAAGCAAAGATAACCAAAGTGATTCACTAAATAATCTTCTCATCAAACCTATCTTAGCCAGAGCCAACCAACAAAATAAAAAATGTGCAGAAAATCTAAAATGTTAGAGTCTTTTATGAATGCTGACCTGTCATTATGTTAGAAAACAAAATGCAGTTTTTAATCAGATTATATAATTCAAGGGATTTAGCCTGTGCTCCCTGGCTCTCTGTGAATATGTTCCCATTGCCCTTTTATCAGTTAGAATGTTGGGTTGGCTACTTTTGAAAAAAGTTCTTATAAAATAACAGTGGCTTATACAAGGTCAAAAAGTAGTCCTGCCACATGAGAGTTTTACAGATAGTCCATTCAGAAGTCATGTGTTACCACAAATTGTCATCAATCTGGCTCTTTATAGTTCACCATTTCTAGAATGGGCTTTTCACGGTCCCAGGTGGCTGCAGGAGTTGCAGCCCCCATATCCACATTCCTGACAGGAGGATGGAAGAAGAAACAAACAAGATGACAAAAGGAAAAGGACGGTGTTTGCTTTGTTGTGCAAGTGCTTCCTACAAGTTAACAAACAGAAATTCTCCTTTCATCTCATTGGTCAAACTTAGTCACATTGCATTACCTAGCTGCAAGAGAGGCTGGGAAAAGTGAATTTATCTTAAGCAACCATATGCCCAGCTAAAAATTAGCAAGAAGACATTTTAAGGAAGGCAATCAGCAGTCTCCATCACAGATGTCCTTTCCCACATCTCCTTGTATTATTTGGGGTGTTCTGTGTTGCTGCTGTGGTCCAATCTTGTTAAAGCCTGTGTATGGATAGATTGATGAATGCTATCTCTCTTGTTACCCATATGGGTTAGGTAAATGAGGACCAGTTGTTCCTGTTGCCTGGGTGTCCCTCACAGTGGAGTAAAATACCCAAGAGGTTTAGACAAGTCAACTGTACTGCTAGGGTATTTTTCAAATCTAATTAAACCTTTTTTTTCTTTTTTTTGCTCTGTCACCCAGGCTGAAGTGCAGCAGCACACTTATAGCTCACTGCAGCCTTGAACTCCTGGGCTCAAGTAATCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGTATGCCACTATGCCTGGCTAATTTTTAAATCCATATTTTTAATCTTTCCCCTCAATTTAGAATTTACCTCCAAACTTTGGCATGTGTATTCAAAATGAACAGTTTGTTTAATACTAGTGCTTTATTATCCTGAGCATTCCAGAATATTTATGTAAATTTAATCAAGTGGCTGGGACATAAAGAACCATTTCTTGTAGGATACCATCTACCTACGCCTTTCAGCTAAAGAGCCTCTTGAGGCTAGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGATCATCCTGGCTAAAAAGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCAGAGGTTGCAATGAGCAGAGATCGCGCTACTGCACTCCAGCCTGGGCAACACAGGGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAAGAGCCTCTTGAGGAAGATGTAGTAAAGGAGTACTCTTTTGGCTCCCTTCACACCCAGATAACTATATTTTTTTAGAGTAAGAAGATAGATTTCTGTTTCTGTAAAATTTGCAGGCAGAAACAAGTAATTGATCATTGTGCATATAAAATTGGTAATTGTGTACAAATAGCACTACTATGGGTATGCAGATGCCTGTTCTTTGTTCACAATGGAGTCTGTATTTTTTAAATATTTCCTTATCACTTGGTTTGCAAAAATACAACTGGCCTGAACTGTGGAATGGTAGGTAGACTCATACCTTTTCTTCAGAAAGCCTGATTCATATTTTTTTCCTGCATCATTTATGTTATCAGAACACAAAGAAATGGATTGACTTGTTTCTTTTAGCACTGAGGATAAAGCCAAGTCATTTATATAAAGTACAGATTGAAGTAATGTACTTAGTTATTATAGTACCTTGGGTTTTATGTGGACTATCTGTAATTCAGAAAGGTATTAAGTGATTTGTTAGATCATAATTCCAAAGTGAAATTTTGATACATATATTGGATCTCCTAGAAATTTCTCACATTTAAAAGTAAATTTTTTTTATACCCTTCAAGGTTAATTCCAGTTATACGGTTTCTCTTTTCTGCCTTCACAAGCTTGCCCTTTATTTGTGGAAAAGTTATTTTTTAATGATTGTATATTTCCAAGCCCCATAAATGACCTAAAAATGGCCTAGTGATTTAGAGTGACCTAGTGATTTAATTGGATCTGCGCTACATGCTTCCTGGCCAATTCTAGAACCGTATTTGGTGGGAGCCCTGGATTCTGCTAAAAGCACTGTCTAAAGAAACTGAAAAGCTCTCTGATCCTGACCCACAGAGAACAAATCTGGTCTTGGTTTAGTATCACAAGTCCTCTGGAAGACTAGGTCTGAACTACTCACACTGGTTCTACATATACTTCATATATGGCCCAAGTTGTCAGATCCATTTCAAATGTGAACTGGCTATAGTTTGCCCATTTTAAAGGACAAGGCAGGGAAGGGCAGATTTTGGCCTCTTCCTCCCCTGTTGCTCAATGCCAGCTGAAGGAATAGTCCTCAACTTCCTTTCCTTGCCTCACAGAACTGCCAAATCTGAACATGGGTGAAATATGACTTTTAAGCCATAGATTGGACAGCTATTTTTCTTTTAATTTTATGGCTGTTGGGCCATAACCGTATCCATGTAGCATGCCAGGATTCCATTTTCCATCTGCGTTCTTAAAAAAAAATCTCACAGGTCTAGGCTGGGCACAGTGACTTGTGACTGTAATCCCAGCACTTTGAGAGGCCGAGGTGGGTGGATCATGAGATCAGGAGTTCGAGACCACCCTGGCCAATCTGGTGAATCCCCATCTCTATTTAAAAATATATACAAAAATTAGCCGGGCATGGTGGTGCATGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCGCCTGAACCCTGGAGGCGGAGGTTGCAGTGAGCAGAGATAGCCCCTCTGGTGACAGAGCAAGACTCCATCTCAAAAAAACAAAAAACAAATAAACAAAAAAAAAACCTCACAGGTCTAGACACATGTTTCCCAATTTTCCATATATCACCCAGTCATCCCAACAATGAATTTTACTTTTAGTTCATTGGAAGGAAATAATGTGTCGTGGTGATTTTATTAGTTAAGGTACAGGCTAAGCTGCTGTAAGAAAGAGAATCAAAACTATAGGGATTCAAACAAGATAGGAGTTTTTTTCTCACACATATTAGGCAGCTTTGTTCCATGAGATCATTCATACGCCCAAGCTGATGGGTGCCCCTGCCATACCTAACTCAAGTTTTCCAGACTTGACCAATCATCATCATTTCTAGCCATAGAAAAGGAAAGAGTTCGCTGGGCCCCGCGGCTCGTGCCTATAATCCCAGCACCTTGGGAGGCCGAGCAGGGTGGATCACCTGAGGACAGGAGTTCAAGACCAGCCTGGCCAATGTGGCAAAAACCCATCTCTATTAAAAATACAAAAATTAGCTGGGTGTGGTGGCATGCACCTGTAATCGCAGCTACTCAGGAGGCTGAGGCAGGAGAATTACTTGAACCCAGGAGGCAGAGGTTGCAATGAGCTGAGTTGGTGCCACTGCACTGCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAGAAAGAAAGAAAAAAAGGGAAGAGTGACAACTAAGACAAGCAATTTCATTTTCAGCAAATGACCTGGAAGTTATACACAACACTTTAGCTGAAATTCTGTTGGCAAAAACTTGGTTGGATGACACAAATGGCTTCATGGGAGGCTGGGAAACAGTCAAGGGTGTCCATGTGCCCAGAGAACCAGGGAAGAATGGATAGTTGTGGTTAACTAGCATTCTCCCAACCGTAATAGCATTCTACTACAGTGATGAAATGAAGATGATGGCTTTATGTCATCCAGATTCTGCGAAGAAAATTTTGCAGAGGAAAATGATGTCAAGCAGTATGACATGGTTAAAATGAACTGTCTCATTTTCTAGTGAACTTAGAAGCATTCAGAAGCATGACTGAAGCAAAATAAAAGTATTCCTCTTAAGCCAACAGACTGGCAAATGCCAAATAATCTCCTGTTAAGCTTCTCATTGGATAAGTAGCCATGCTGAAGACTGCCTCTGTAGTATCTCACTCTCAAAGTTCTTTACAAGATTATTGAAAACGCAGACCCTTGCTCTTGGAAACCATACAGATGGATAATCAAGCATTTCTTCTCTTTTTTCCCAG
Seq C2 exon
GATACACTTGAAATATGCTCCAAGGAGCAGGAGTTTAAAAGCATCCTTTTTTCTCTCTGCTACTTCCACGCCTGTGTTGCTGGGAGACTGAGGTTTGGCCCCCAGGGCTGGAGCCGAAGCTATCCTTTTAATCCTGGAGACCTCACCATTTGTGCCAGTGTCCTCTACAACTACTTAGAGGCAAACTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105877-DNAH11:NM_003777:74
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.9=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development