DreINT0009190 @ danRer10
Intron Retention
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19423332-19423686:-
Coord C1 exon
chr16:19423585-19423686
Coord A exon
chr16:19423467-19423584
Coord C2 exon
chr16:19423332-19423466
Length
118 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TACCTGCTTTGTGCTGACAGGAT
3' ss Score
7.67
Exon sequences
Seq C1 exon
GTTTATTGTGAGGTTGCACCGAAACGTCTGGCTCTGGCACAAGCCAACAGTGAACTAGAAACTGCTACCACAAAACTCCTCAGCGTTCGAAGGAAACTGGAA
Seq A exon
GTAAGTATAATCTAAATAGCTTCATTTTATACAATAAACACACCATAAGCAGTCAGTGACTGTAAACTCAATATTGAAATATAAAGCAGTATATCTTATACCTGCTTTGTGCTGACAG
Seq C2 exon
GATCTGGACCGGCACCTGCAAAGCCTAACAGCTCAGTTTGAGAGGGCAGCGACTGAGAAACTGCGCTGCCAGGAGGAAGTGACTCGCACCAGCCAGACTATTAAACTGGCCAATCGGCTGGTGGGAGGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282:ENSDART00000138744:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.6=100)
A:
NA
C2:
PF127772=MT=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGTGAGGTTGCACCGAAAC
R:
CTGCAGGCCTCCCACCAG
Band lengths:
234-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]