GgaINT1011527 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10089770-10090347:+
Coord C1 exon
chr18:10089770-10089977
Coord A exon
chr18:10089978-10090231
Coord C2 exon
chr18:10090232-10090347
Length
254 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
GCGAGCGTTGTCTTTTGAAGGAC
3' ss Score
6.47
Exon sequences
Seq C1 exon
GCGCTACCAGACGGACCCCACCTTCGACCCGGAGTTCATCATGTCGAAGTCGACGGCCGCGGCGGGGCTGTGCTCCTGGTGCCTGAACATCGTCCGCTTCTACAAGGTGTACTGCGAGGTGGAGCCCAAGAGGCTGGCGCTGGAGGAGGCCAACGCGGAGCTGGCGGAGGCACAAGACAAACTGAGCCGCATTAAGAAGAAGATTGCG
Seq A exon
GTAAGTGCGCGCTCCCCCCGGGCTGGGCGGCTGCAGGACTGTGTGCCTCGGACAGTGTCCCCATGGCTACGGGCTGATGAGACGCCAGTGGTGAATGGGATATGGTTATCGGTCTTGCGGCCCCAGCCCGGCTGCAGCTGTGCCCTCTCACGGAGCACTGAGCTCCTCGCTCCCGCGGAGCTCTGTGTTGGCGTCCCGCTCGCTGCTGGCGCTGTGTGTGGGTGGGAGCTCACAGCGAGCGTTGTCTTTTGAAG
Seq C2 exon
GACCTGAATGCCAATTTGGCAACGCTGACTGCGCAGTTCGAGAAAGCGACGGCCGAAAAAATCAAGTGTCAGCAGGAGGCTGATGCAACCAACAGAGTCATCACGTTGGCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(20.1=100),PF041569=IncA=PU(43.2=72.9)
A:
NA
C2:
PF127772=MT=FE(11.0=100),PF041569=IncA=FE(32.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCGGAGTTCATCATGTCG
R:
GGCCAACGTGATGACTCTGTT
Band lengths:
294-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]