DreINT0058339 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10380419-10380734:-
Coord C1 exon
chr6:10380633-10380734
Coord A exon
chr6:10380554-10380632
Coord C2 exon
chr6:10380419-10380553
Length
79 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TGTGTTTATGAAATATGCAGGAG
3' ss Score
4.27
Exon sequences
Seq C1 exon
GTGTTCTGTGAGGTGGAGGTGAAGAGGTTGTGTCTGGCTCAAGCAAACGCTGATCTGGTTGAGGCTGCAGAAAAGTTAGAGATCATCAGAAAGAAGCTGGCC
Seq A exon
GTAAGTATCTCTTATTTGCTCTCTCGATATCTCATCATTGTTTTACAAAAAAAGTCAAATGTGTTTATGAAATATGCAG
Seq C2 exon
GAGTTGGACGGTAGTTTGGAGACACTGACAGCTGCATTTGAAAAAGCAACCTCGGAGAAATTGCGCTGTCAGGATGAGGTGAACCAGACCAACACAACCATCCTGCTGGCCAACCGCCTGGTCAAGGGTTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(9.6=100),PF083176=Spc7=FE(30.6=100)
A:
NA
C2:
PF127772=MT=FE(12.8=100),PF083176=Spc7=FE(40.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAGGTGGAGGTGAAGAGG
R:
GTTCACCTCATCCTGACAGCG
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]