RnoINT0048830 @ rn6
Intron Retention
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107060768-107061314:-
Coord C1 exon
chr10:107061107-107061314
Coord A exon
chr10:107060884-107061106
Coord C2 exon
chr10:107060768-107060883
Length
223 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
GCTCCAACTTGATTTTTCAGGAA
3' ss Score
8.58
Exon sequences
Seq C1 exon
GCCGTATCAAGGCAACCCCACATTTGACCCTGAGTTCATTCGCTCCAAGTCCACAGCTGCCGCGGGCCTGTGCTCCTGGTGCATCAACATCGTGCGCTTCTATGAGGTCTACTGCGATGTGGCGCCCAAAAGGCAAGCCCTGGAGGAGGCCAATGCAGAGCTGGCTGAAGCACAGGACAAACTGTCCCGGATCAAAAACAAGATTGCT
Seq A exon
GTAAGTGCTCGCCAACCAGGAGGCCCTGTGAGACGCCACTCCCCGCCAATCGATGTTTCTGCTTAAAACACCCTGGCACAGCCCGAGGTCACCGATTAGTAAATGATATGAACAGGAAGGCACCATAGAGCAAGCCAGGGGGGATTATGGGTTGGGGAAATGCAGGGCCTTGAGGCCCTGAGCTTCTAGGAGCTGGGAAAATCGCTCCAACTTGATTTTTCAG
Seq C2 exon
GAACTCAATGCCAACCTGAACAACCTCACCTCCGCGTTTGAGAAAGCAACAGCTGAGAAAATCAAGTGTCAGCAGGAGGCGGATGCCACCAACAGGGTGATCTCATTGGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028:ENSRNOT00000004035:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(20.1=100),PF041569=IncA=PU(38.6=55.7)
A:
NA
C2:
PF127772=MT=FE(11.0=100),PF041569=IncA=FE(37.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCTGAGTTCATTCGCTCC
R:
AGCCAATGAGATCACCCTGTTG
Band lengths:
294-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]