BtaINT0050378 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54384000-54384566:+
Coord C1 exon
chr19:54384000-54384207
Coord A exon
chr19:54384208-54384450
Coord C2 exon
chr19:54384451-54384566
Length
243 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
TTCCCACCTTGTCTTTCCAGGAG
3' ss Score
11.13
Exon sequences
Seq C1 exon
GCCCTACCAAGGCAACCCGACCTTCGACCCCGAGTTCATCCGCTCAAAGTCCGCGGCTGCCGCGGGCCTGTGCTCTTGGTGCATCAACATCGTCCGCTTCTACGAGGTCTACTGCGACGTGGCCCCCAAGAGGCAGGCCCTGGAGGAGGCCAACGCTGAGCTGGCCGAGGCCCAGGAGAAGCTCTCCCGCATCAAGAACAAGATTGCC
Seq A exon
GTGAGTGCGGCCCGCGGTGCGGCTGGCCACCATCTCCGCCTGAGAGGGGTTGGCCTGGCCACCCCTGTCAATTACTGAGCATCTGACGTGGGGCCCGGAACACCCTGGAGGCCGCCTGCCTCGGCCGTGCTTGCGGCCCTCAGGCCCCTCGGGGATCTCAGCCCTCCCAGGGCTCAGCTGCCTCTACTCCCAGGAGAGCCAGGGGCATCCCGATTTCAGGGCCTTCCCACCTTGTCTTTCCAG
Seq C2 exon
GAGCTCAACGCCAATCTGAGCAACCTGACGTCGGCATTTGAGAAAGCGACGGCCGAGAAGATCAAGTGCCAGCAGGAGGCTGATGCCACCAATAGGGTGATCTCGCTGGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920:ENSBTAT00000022637:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(20.1=100),PF041569=IncA=PU(47.1=68.6)
A:
NA
C2:
PF127772=MT=FE(11.0=100),PF041569=IncA=FE(37.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCATCCGCTCAAAGTCCG
R:
CTGTTAGCCAGCGAGATCACC
Band lengths:
292-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development