GgaINT0127381 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1108251-1111043:+
Coord C1 exon
chr18:1108251-1108676
Coord A exon
chr18:1108677-1110923
Coord C2 exon
chr18:1110924-1111043
Length
2247 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TCCCTGTCTTTCCTATGCAGCGC
3' ss Score
11.27
Exon sequences
Seq C1 exon
AAGAACCTGACGGAACTGAAATCCTTTGGGTCACCACCTCCGGCTGTCAGCAATGTCACCGCTGCTGTGATGGTGCTGATGGCCCCGGGAGGGAAGATTCCCAAGGACAGGAGCTGGAAGGCAGCGAGAGCCACCATGGCCAGGGTGGATGCGTTCCTGGACTCCTTGATCAAGTTCGACAAGGAGAACATCCACGAGAACTGCCTCAAAGCCCTCCAGCCTTATTTAGAGGATCCCAAGTTTAAACCCGAATTCGTAACCACCAAGTCCTACGCGGCAGCCGGCCTCTGCTCGTGGGTGGTGAATATCGTGCGCTTCCACGAGGCCTACTGCGACGTGGAGCCCAAGCGGCAGGCCCTGAGCAGAGCCAACGCTGAGCTGGCGGCTGCACAGGACAAGCTGGCCAGCATCAAGGCCAAAATTGCA
Seq A exon
GTGAGTGTGGAAGGGCGCAGCAAGCCGTGGCATGGGCTTGCCTGTGAGGGGACCCATCGTGCAAGTCACTGCTTTGGGGAGAAATCCTCTGCTTTGGGGAAAGCTGCTTCTCCGCCCTCATGTATTTTTAAACGGGTGGATCTGAGGGTTGAGCAGGTTGTAGGGCTTTTATCTCCCTTTCATTGCTGCTTTTTACATTTCATCCCCAGGCTCCACTCCTGTGTGTGCCTTAATAGAATGGCTAGTTATCAATTCTTATTATACCTAACTTTTAAGATGCGATTTGCCTCTACTCAGCGAGTTCTTGGAAAACTCGTTAATTCAGAGCAGGGAGAGGTCTGCCCTGCTGTGCAGGGGCAGGGAGCAGGGCTGGCAGCTGAGCCTGGTGATGCTCTGCAGGATGAAGGCTCCTCCAGCAGAGTCTGCTAATTTGTCCCAGCACGGCTCCCTGCCAGCATGTCTTCACATCATCCTCAGCTTAAGAACAGAAAGGCATCACTGGATAGGTGAAATCACTGTCTGATTGTAAGTGGGTTCTACAGAGAGCAGCCGCTCCAAAAGCCTGTTTTTGTACCCAGATCCCTGTCCAAAGCCTGCTGGTAGCAACGTGTGGAAGCAGGCATGGGGGCACCCTGCAGAGCCTGCCTTTCCAAGGTGCAGTGGATCTGGGATCCCTCTTGGTGATGGGTGGGTCCTCCAGGGCTCTGCATTTGTACTGACAGCACAGTTCACACGGAATCCCCTTTCAAAACCGAAGTGTGTTGTCAGCAGGGCTGCCAAATTTCTTTCCATAAATTATGTCAGCTTGGGATGTGCCCCTGGGGCAGCACGATGTCACTACACCTCTACACCTCTTCCCCAGTGCATCTCCATGATAAGCAGTATCCAACTCTCTTGCTGCCTCTTAGGGCTGCTTATTCTTGAAGTGTTTGCTGCACTTTTAATTAAAAGTATATTAGAAAAATTCTACAGAGCACTCCAGTAGCCTCCTCCTGCTGCAGATATGACATGTACAGCACCCGCTCAGAGATGGGTTTTTAGAGGTCTCCTTTTCCCATCTCAGATGTGAAATACGGTGTTAGGGAACTGTTTGCTTTCCATTATTCTGTCTGTTCCCAATGCCTTAATGCCTAGCTATTATTACTACTTTATTGTTTTTGAAGGGGCAGTATTATGGTGAGGAGGATGGCTCTCTCTGGGGTTTTGTGGTCCTTTGCTGACACACACGTTACTGTTCCTGCGGTGTGCCTGGTGGGGCACCTAGATGCTCTTTAACAGATCATGCATCTGTAATAGGGTTTTATGTATATGTGAATATATATATATGCACATACATTTATATGCACACAGAGATATAAACTTTTTGTGTTATTATTTCCAAGGCAGTTTGAGAAAAGACCACTTTGTGTTTTCCAAGATACTGGAGAGCTACAGATATCCCTAAAATAATCCTTTTTCATTTTCGAGTTTGTTTCTAGTGCATAGCTCAAGCAGTGTTCAGGTGATTTACAGGCAGTTAGCCTTAAGCATTTGGCACTGGGTGCAGATAAAATCAATTATTACTTCTGCTTCTCTTATCAGAACCGAAAGGCTCCCAGTCCTTGTGGGAGCTGCTGACTTGTTTGAGACTGAAGTGTAAGCAGTGCTGTCCAAGCCAAGGGCCCTACTTGAGTAGCACGGGGGTATTTCAGATGGTTTGGGCTCTTTGTGCCCAATCCCAGCCCTGAAGTGCTTTGCAGCCCACCCAAACATGTGCTGGTCCCAGCTAACACATGCAGGACACACGGTGCAGCAGATGCAGCTTGGAGGTGGCTCCAGCATACCTCCAGCTCTTTGAGGAGCCCCATGGGGTTTTGAGCAATAACTTGAATCCAGCAGAGCCTTGGTCTCCAACCAAAGTGGCTACAGCATTGAGAACCAGAGAATTCTCTTTTCTAAGCTGCCTTACTTGTTTCTCACCTGTAGTGTTGGCCGTCAGCACTCGTTGGCCTATCTTTCCCAGTTCACATTCACACCAGGGCAGAGCCTGCAGATAAATGCCTTTTTGTGTTGTCTCTGCCCTGTGCAGATGACACAGCAGTGGGTAGCAGTGGGTGAAGCTGCAGAGCTCAGCACTGCTCTGTGCTTCATCCCAGGTGCTGGCCAGGCTGTGTGCCATGAGGTGAAGAGTGGCTCTCCTTGCCTGCAGGCTGCAGAAGGAGTTTCCTTAAGACTCTGCTGTTGTTTTTCCCTGTCTTTCCTATGCAG
Seq C2 exon
CGCCTCAATGAGAACCTGGGAAAGCTGACAGCCAAGTTTGAGAAGGCCACTTCTGACAAACTCAAGTGTCAGCAAGAAGCTGAAGCTACAGCATGTACCATCACTCTTGCAAACTGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(41.0=100)
A:
NA
C2:
PF127772=MT=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]