MmuINT0050784 @ mm9
Intron Retention
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117911182-117911730:-
Coord C1 exon
chr11:117911523-117911730
Coord A exon
chr11:117911298-117911522
Coord C2 exon
chr11:117911182-117911297
Length
225 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
GTTTTTGTTTTTGTTTTCAGGAA
3' ss Score
11.73
Exon sequences
Seq C1 exon
GCCGTACCAAGGCAACCCCACCTTTGACCCTGAGTTCATTCGCTCTAAGTCCACGGCCGCGGCAGGCCTGTGCTCCTGGTGTATCAACATTGTGCGCTTCTATGAGGTCTACTGCGACGTGGCGCCCAAGAGGCAGGCCCTGGAGGAAGCCAACGCCGAGCTGGCTGAGGCACAGGAGAAACTGTCCCGGATCAAAAACAAGATTGCA
Seq A exon
GTAAGTGCTTGCCTGCCAGCCGGGAGGCCCTGTGAGACGCCACTCCCTGCCAGTCAAGATTTCTACTTTAAAACGCATTGGCACATAGGAAAGCACCACAGAGCAAGCCAGGGGACTATGGGAGTGGGGGCGATGCTGGGCCTCGAGGCCCTGAACTTCTGGGAGCTGGGAACATCCCCCAACTTGTTGGTGTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTCAG
Seq C2 exon
GAACTCAATGCCAACCTGAGCAACCTTACCTCGGCATTTGAAAAAGCAACAGCTGAGAAAATCAAGTGTCAGCAGGAGGCAGATGCCACCAATAGGGTGATCTCATTGGCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-Dnahc17:NM_001167746:61
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(20.1=100),PF041569=IncA=PU(38.0=54.3)
A:
NA
C2:
PF127772=MT=FE(11.0=100),PF041569=IncA=FE(38.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCTTTGACCCTGAGTTC
R:
AGCCAATGAGATCACCCTATTGG
Band lengths:
303-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: