HsaINT0049568 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76454647-76455290:-
Coord C1 exon
chr17:76455083-76455290
Coord A exon
chr17:76454763-76455082
Coord C2 exon
chr17:76454647-76454762
Length
320 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TTTCCAACTTGGTTTTGCAGGAA
3' ss Score
9.65
Exon sequences
Seq C1 exon
GCCCTACCAAGGCAACCCGACGTTCGACCCCGAGTTCATCCGCTCCAAGTCCACGGCCGCCGCCGGCCTGTGCTCCTGGTGCATCAACATCGTCCGCTTCTACGAGGTCTACTGCGACGTGGCGCCCAAGAGGCAGGCACTGGAGGAGGCTAATGCAGAGCTGGCAGAGGCACAAGAGAAGCTGTCCCGGATCAAAAACAAGATTGCC
Seq A exon
GTAAGTGCCGGCTCGCTCCCGTCCCTGCGAAACACCAGAGCCGCTTGCTCGCGCTGCCAGTCAATACCTCTGTTGAAAATGGGTTGGCACGGCCCGCCGTCATGAATTATTCAGCAGTGCAAGAGGATGCAGGCAGAGGCAGGGGCCAGATGGTGCCGGGAGCCGCTTGGTGTCCTTAGCCTCCATGCTCCAGAGGGCTCTCAGCCTTTGTGGGAGCCTCTTCCACGCTCAGCGCTCACAGGGCCCAGCCCTGCTGCCGCTGCAGGGGGCTAGAGATGCCTCGTGGGGTTTTCCAGCAGCTTTCCAACTTGGTTTTGCAG
Seq C2 exon
GAACTTAACGCCAACCTGAGCAACCTAACCTCAGCGTTTGAAAAAGCAACAGCTGAGAAAATCAAGTGTCAGCAAGAGGCCGATGCCACGAACAGGGTGATCTTACTGGCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:61
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(20.1=100),PF0218511=HR1=PU(69.1=54.3),PF041569=IncA=PU(39.0=55.7)
A:
NA
C2:
PF127772=MT=FE(11.3=100),PF0218511=HR1=PD(29.1=40.0),PF041569=IncA=FE(39.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACCAAGGCAACCCGA
R:
TCGCCAGTAAGATCACCCTGT
Band lengths:
319-639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)