DreINT0009282 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39568720-39570687:+
Coord C1 exon
chr24:39568720-39568931
Coord A exon
chr24:39568932-39570595
Coord C2 exon
chr24:39570596-39570687
Length
1664 bp
Sequences
Splice sites
5' ss Seq
ATGGTACAA
5' ss Score
2.37
3' ss Seq
GTTTTGTTGCCTCATAATAGATT
3' ss Score
6.48
Exon sequences
Seq C1 exon
GTCCATTCCAGCAACTGAATGCAGAGACCGTATCAGAAGATTTAGGAAACATGTGGCGCACTATGTACAAACTTGCAAAGTCATTTCCAGAGCGGACGGCTCCCGGACGCGTCACAGAGAACTTTAAGAAAAAGATTGACAAATTCAAACAACACCTACCCATTCTGACAACTATCTGCAATCCAGGCCTGAAGGACAGACACTGGGAGATG
Seq A exon
GTACAACATTAATATTCATAATGATTTATTGACACTGGATCATTTGATTGAGTACGTTTACATGGACAACAATAGTCCGATTTTAAATGTGATTAAAACAATACTCTGATTAAGAGTCAACCATGTAAACAGCGATTGTTTTTTATTTTTTATTAATTTAATCCTATTAAGCTCATAATTGAGCTAAATGGAAATCAAATTAAGACTTGGAGTAAGCCGACTTTAGTGGCATTATTGAAGTGCAGTATTGACATGTAAACACTGCAATCAAACTATTACCATCGTGTAGGACGCGTACCGTTGTGTGTTTGTCTTACTTTGCGACAGGATAGTTTATACACACACAACTGTTTGACACTATTATCTGCACTACCGAGTCAGTGAAGGGCCACAGACACACACATGCACAAATGCAGAGTTTTTTTCGCCATACGGTATGCAGTATCAAACACCATTAAAACACTTGTCCAGCAGTTCATACTCGCATCCAATATCTAGTTTGTCACGAAATGTTCCTGAATAAAAGTGAAACTGCCAAACTTATCTAAACTTAATTAAAAATAAAACAACTTGATTGACTTATGTTTAATACAATCAAGGCGTTGTATTGCTTTATATTGGAAAAATGTTAATCGCCCCTCCACTGGGCTTTGGTTGAGAAACCTAATAACATGTTTGGCTCTTGAAGAGCTCACATATATAATAAAAAATATATATATTGAAGAGAAAAGATATTGAAAAAGCTTTGGAAGTCTAAAGTTGTGGAATGCGAATTGGTGCTTGATTATAATTTTTTATTTTTATTTTAAATAATTATTTTTTTATATATAATTTTTAAAAATTATTTTTGAATATAATTTTAATAATTAATAATAAAATATTAATAAAAATAAAATAATCAAATAAAATCAAATAAAATAATCAAATATAATATTAATAAAATATTAATAATTTGAATTATAGTAAAACCTTGAAAACACTCAAAGACATGGTTTACAAAAAATGAAACACCCGAAATTACATGAAACTCATAATAAATGAAATTTTGTCGATAGCGTAGTGACGCAATGACGTTAATCAAATTATGTGCTATAACATGTAAAACGGGATCATGAAAGAAACATTCAAAAAGCGACTCATGTAAACACCTTAATGATATTATTGTTTTATTCATTCATTTTCTTGTCGGCTTAGTCCCTCTATTAATCCAGGGTCGCCACAGCGGAATGAACCGCCAACTTATCCAGCATATGTTTTACGCAGTGGATGCCCTTCCAGCCGCAACCCATCTCTGGGAAACATCCACACATACACCACGGACAATTTAGCCTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCGGAGCACCCGGAGGAAACCCACACGAACGCAGAGAGAACATGCAAACTCCACACAGAAACGGCAACTGAGCCGAGGTTTGAACCAGCGACCTTCTTGCTGTGAGGCGACAGCACTACCTACTGCGCCACTGCTTCGCCCTGTTTTATTCAGATTAAGGCAAATAACTTGATTACTGATGTCCATGTAAATGTAGTCACTGATTTAAGTTTATAGTTGAGCTGATGAGGTTGATGAGTATGCATTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTTGCCTCATAATAG
Seq C2 exon
ATTAGTAATACTGTGGGATTTGATGTAAAGCCGGATGAGAACACTCCACTCATCAAAATGGTGGAACTAGGATTGTCAAAATATTCTGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(18.1=100)
A:
NA
C2:
PF083938=DHC_N2=FE(7.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATTCCAGCAACTGAATGC
R:
TGGTCAGAATATTTTGACAATCCTAG
Band lengths:
304-1968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]