GgaINT0013836 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15742556-15743137:-
Coord C1 exon
chr14:15742926-15743137
Coord A exon
chr14:15742648-15742925
Coord C2 exon
chr14:15742556-15742647
Length
278 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
ACTTCTTACTTCATTTTCAGATT
3' ss Score
11.23
Exon sequences
Seq C1 exon
GATTTCTCCAGAAATTGAATGCTGATGAAATTACTGAAGAAATTGGCGAGATGTGGAGAACAATGTACAAGCTCAGCAAGAGTTTTCCAGACTTGGCTGGGCCGAGGCGCTTAGCAGAAAGCACAAAATACAAACTCGATAAGTTTAAGCAGCATCTTCCTGTCCTGTCCCTTGCCTGCAATCGTGGAATGAAGGAGAGGCATTGGGAGCAG
Seq A exon
GTACTTCAGGCTCTGCCCTAACCTGGGGTGCACTGCTGCGCGTGATGGGGACAGTTCTGTGTGCCACCGTAAGAAGATGCTGTGTTCTGTTGCTTTGTAGATCAGGTTCTGAAATTTCCAATGGTACAGATCTGAGCTCCTCTGAAGTAATAATTTTTGGCAGAAAAGGGAATGGGACGGTTATGTGAGCACTGTTCAGCATTTATTTCTTGCTGTTTGATAAATCTGCTACAAGCGTACCTCCTGGTAACAGATACTACTTCTTACTTCATTTTCAG
Seq C2 exon
ATTAGTGAAGTTGTAGGATGTGAAGTCAGACTGAACGAAACTACTACCCTTCTAAACATGCTGGAATTGGGACTCTCAAAATACATTGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(16.9=100)
A:
NA
C2:
PF083938=DHC_N2=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCCAGAAATTGAATGCTGATGA
R:
ATTTTGAGAGTCCCAATTCCAGCA
Band lengths:
292-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]