DreINT0009295 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39579418-39579836:+
Coord C1 exon
chr24:39579418-39579531
Coord A exon
chr24:39579532-39579659
Coord C2 exon
chr24:39579660-39579836
Length
128 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TGTTGGTCGTTTTGTGCCAGGTG
3' ss Score
7.94
Exon sequences
Seq C1 exon
TGTGTGGTGTTCAACTGTTCTGATGGTCTGGACTACAAAGCGATGAGTAAATTCTTCAAAGGCCTGGCACAGTCTGGAGCGTGGGCATGTTTTGATGAGTTCAACCGGATAGAG
Seq A exon
GTCAGTAATGCATGATAAACACAACAAAAGAGTGGAAATGCAACATCTAATTATCTAATCAATCAAATAATGCAGTGTTATTGATGACTGTGCTTGCTTATAAGTTAGTGTTGGTCGTTTTGTGCCAG
Seq C2 exon
GTGGAGGTGTTGTCTGTGGTCGCTCAGCAGATTTTGAGTATTCAGCAGGCTGTAATGCGAAACATGAAGACGTTTATGTTTGAGGGAACTGAGCTCTCCCTAAACCCAACATGCTGCGTGTTTATCACCATGAATCCAGGATACGCAGGCAGAGCAGAACTACCCGATAACCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.0=100)
A:
NA
C2:
PF127742=AAA_6=FE(25.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCTGGACTACAAAGCGATG
R:
CTGCCTGCGTATCCTGGATTC
Band lengths:
243-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]