GgaINT0013848 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15728819-15731108:-
Coord C1 exon
chr14:15730995-15731108
Coord A exon
chr14:15728996-15730994
Coord C2 exon
chr14:15728819-15728995
Length
1999 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
AATTCGCTCTGCCTTATTAGGTT
3' ss Score
7.29
Exon sequences
Seq C1 exon
TGTGTGGTCTTTAACTGCTCGGATGGTCTTGATTACAAGGCAATGGCCAAGTTCTTTAAAGGTCTGGCACAGTCTGGGGCATGGTCCTGCTTTGATGAATTCAATCGGATTGAG
Seq A exon
GTAATTTCTTAACTCGGACAAGTAATATGCAAAGCTTTGACCGGTCAAAGGGGCTGGTCACGCGGATCTGTGGACAATTGCAAAGTCTGCACTAACGTACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGGTGGATTCCCACAAGGTTTTAGATTGGTACATGACAGCACTATTGCCAATCCTTAAAATCCGTTTGGTGACATGGCTGCTTTGTTTTGATGCTCGTAAAGAGAAATGGGTTACCTCAGGTACCTGTTGTAGGAACACATCTGCCTGAGCTGTGTTGCAGAAGCCTTATGTTCTGGGTCATCTATCTGGGGGTGGGAAATACTGCTGTATGATTTCCTGTTTTGTTTGTGACAGTCATAGTTTGATTCCAGAATAACCCAGATTTCTGATAGAAAAGAGCTGTCGTGCTGCTCTTCTTGAGGCAGCCTTTATCGATGTCCAGCACGAGACAGACAGATCCCAGCAGAGGGTCTCCTTGTGACAAATGAGTGTCACTGCGTTACCAGGTTAAGTGGCTGCATAACCAGACTTGCCTAACTTACTCCTCACCCTGGATAGAATCTCACACTCTCTCTCTCTTTATAAATTTGGTCATCAATGACTTCAGACAAGCTTTATTGATACTTTGGTGGAGTTGGATTTAGGTCAATTCTAGTAAGCCTGGAAATTCCACAAAGATCTGTATTTTGTTATGTTTTAGTGTCTTTAACAGCTGAAATTCTCTATTTGTCTGCTGTAACTTGTATTTTAATGAACTCCAGTGTTAGCATTCTCATTTTCCAGTGTTCTGTAACCTGAATAGGAGGCACTGAGGATTAGCCCTGGGTGGCCTTAGCCATTCCTTGTGTTTCCCGTCCATTTGGGGCACTGAACGAGTCAGTCATTCTGAAGATGCTGAATTGTATGTAGCGTGAGGCAGAAGGTTGGTGTTCCTGGAGGCTTCCAGAGGGAGCTCCTGGCCACCCGATTTGACTGTCCATGTTCAGGCAGATCGCATTTTCTTTCGGAGGCTTTCAGAAGCCTCGTGGTATCTGTACATTCGTTAAATAGAGAATGGGAGTATGACATTTCCGAGGATTGCTTTAAAAGATGGCTAAAATTTAGGCTCGATTATCAGTCTGGGCCTTACCTTGAGTGGTTCTCACCTGGAGGATTGCAGGAGATAGCCATCAAAATATAAAAACCTTTGTCTCTGTATTTCTGATGTTTTCCAATTCGCTCTGCCTTATTAG
Seq C2 exon
GTTGAAGTATTGTCTGTGGTCGCCCAACAAATACTTACCATACAGCAAGCTATTATCCGTAAAGTCAAAACGTTCATCTTTGAAGGCACTGAGATCTCTCTCAATCCCACCTGTGCTGTGTTCATCACAATGAATCCTGGCTATGCCGGCCGGGCTGAGCTGCCCGATAATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(16.0=100)
A:
NA
C2:
PF127742=AAA_6=FE(25.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGTCTTTAACTGCTCGG
R:
CAGATTATCGGGCAGCTCAGC
Band lengths:
288-2287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]