DreINT0009309 @ danRer10
Intron Retention
Gene
ENSDARG00000068468 | DNAH3
Description
dynein, axonemal, heavy chain 3 [Source:HGNC Symbol;Acc:HGNC:2949]
Coordinates
chr24:39593731-39594121:+
Coord C1 exon
chr24:39593731-39593910
Coord A exon
chr24:39593911-39593997
Coord C2 exon
chr24:39593998-39594121
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
GTATAATTCCTCTCTCGCAGGAC
3' ss Score
8.89
Exon sequences
Seq C1 exon
ATGATCTGAACATGCCCGCGAAGGAGATATACGGTGCTCAGCCGCCTATTGAACTGCTGCGGCAGTGGATCGATCATCATCACTGGTATGATAAGAAAGACACGTCCAGGTTGGACATTGAAGATGTGCTGTATATGTCTGCTATGGGGCCCCCTGGTGGGGGGAGAAATGACATCACAG
Seq A exon
GTGACACATCTCAGATCATTAATGCTCGTCTCTAAATCAGTCAGTTTCTTCTGTGTAACTGTGTTTAGTATAATTCCTCTCTCGCAG
Seq C2 exon
GACGATTTACACGTCACCTAAACATCTTATCTATTGACACATTTGATGATGAGACTCTGAGTAACATCTTCACATCCATCACCGACTGGCACTTCAGCAATGGGTTCGATGCCTCTTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068468:ENSDART00000142998:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(22.2=100)
A:
NA
C2:
PF127752=AAA_7=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGACACGTCCAGGTTGGA
R:
CTGAAGTGCCAGTCGGTGATG
Band lengths:
183-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]