GgaINT0013861 @ galGal3
Intron Retention
Gene
ENSGALG00000002350 | DNAH3
Description
NA
Coordinates
chr14:15717985-15719250:-
Coord C1 exon
chr14:15719071-15719250
Coord A exon
chr14:15718109-15719070
Coord C2 exon
chr14:15717985-15718108
Length
962 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGTTCTTCTGTGTGTTACAGGGC
3' ss Score
11.55
Exon sequences
Seq C1 exon
ATGACCTAAACATGCCGGCCAAGGAGGCGTACGGAGCACAGCCACCCATTGAGCTTCTCAGGCAGTGGATTGATCACGGTCACTGGTATGACCAGAAAGATGCATCCAAGATTAATATTGTAGATGTGCTGCTTCTGTCAGCTATGGGTCCTCCTGGGGGAGGCAGGAATGATATTACAG
Seq A exon
GTAGGAAATCTACCAAGGGTAGTACAAAGTCTGTGCACGAGGAAAAAAATATATCGTGATGAAGAGTTGTCTAATTGAAGTTAAGAATCAGGTTTCATTTTGCTGATGACAGATTCTACATTTGTCTATCATTTGGATTGCTTCCAAAAAGAAGTATGTGTGCTCAAGGTCAAAACTGTACCTTTTCCAGGATGAATTCAATCAACATTAGGAAATAGATGATGAAATGGCAGTAAACTTTGAGAAATTGACACTTCACTTTTCCCACTTTTCACTCTTTGGAAAGGGAAGGCAACACATCTTCCTGACAGGTCTCTCTGGCTACACTACCAATTCTCACCTGAAGTCCTATCACCTGCTGCTGAGAGAGGCTGCCAGCATTTACTTACAAGCACGTTGCTCAAAAATCTGTGGTGCCTGCCAAATCACTGTGAAGAAGGTTATATTTTCTAATGGAAAGCCTTACTATAGCTACAGCTACATCATTATAATCACTTAGCCTCCATATAAAGACTCTAGTACAGGCATACCTGTCTGCCCTCTGAGGAGGCTTTGTTAAAGTAGCTATCCTGATGCAGCTGAATTTTTATAATTTAGTAGTATATATTCTGCATACTTTTAGATGAAATCTGAGAAGAAGGTCATTGCTTTCATAAAGTTTTACTGTGCCATATCATGGATATGTTAAAGCTCCTGAAATTGCAATTTGGGTAATAGTGGCCATATTGTGATGGAGATTTGTGGTTTCCTAATTAAAAAGCTGTCAATTTAAAGAGGAATACTGACATAAAATATGAACCATTTTGGTGTCACTGCTGGGGCAGAAATTAGGCAAAAATAAAATTGTGGAGCTACAGCCAGATACAAATCTGTGTGAGTTGATCCTAGCCAGATGCTAAGGGAAGGCAGAAAAGCACTTGGATGTTCCTAGATCCCTCTGTGTGTTCTTCTGTGTGTTACAG
Seq C2 exon
GGCGCTTTGTGCGGCACTTGAACGTTGTATCTATCTGTTCTTTTGATGATGACATTCTCACCAAGATTTTTACTGCAGTTGCTGATTGGCATTTTAGCAAAGGCTTTGAGTCCATCTTTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002350:ENSGALT00000003708:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(22.1=100)
A:
NA
C2:
PF127752=AAA_7=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTAAACATGCCGGCCAAG
R:
CTTAGAAAGATGGACTCAAAGCCT
Band lengths:
302-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]