DreINT0010178 @ danRer10
Intron Retention
Gene
ENSDARG00000052766 | EVI5L
Description
ecotropic viral integration site 5-like [Source:HGNC Symbol;Acc:HGNC:30464]
Coordinates
chr1:44549063-44550234:+
Coord C1 exon
chr1:44549063-44549116
Coord A exon
chr1:44549117-44550093
Coord C2 exon
chr1:44550094-44550234
Length
977 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCCCATTTCTCTTTCCTCAGGGT
3' ss Score
10.51
Exon sequences
Seq C1 exon
AGGCTACGTACAGAAAATAGATTACTGAAGCAGAGGATTGAAACACTGGAAAAG
Seq A exon
GTAAGATGGTTTTCATCATCCACACAGTATGCATGAACCTTAAATACTGCTTATTACTTTGTGTTTGAGTAAAGAGTGTAAATATCTTTATCAAGTCAATCAAACAGTCAGAGCATGTAAATCTCTAAAGAGGCTCAGCTGTATTGCCTCATACCTTATGGTCAATCTTAAAAGTCTTATCTTCTTTCTTTTTCTCTTCCTTCCTCTTTTGAAATGACTTCCTCACAATATCTTACTCTGTAAAAATCACTTTTATATGTTTTATAAAAAAAAAAATTTCACTCAACTTAAATATGTTCCCTTTTTTTCTCTTCATGTGTGTCTTATTTGCTTATCCACTGTTTCCTTCCTTTTTCCTATTCTGTCCCTCATTTCAACTTTTTCTTTCTTCTCTCTGTATCCTTTCTCTCTTTTTTCCTCCTCTTATGGTGTTGTAGGAGAGTGCTGCATTAGCAGACAGGTTGATTCAGGTACAGTACTGTCAAGCCAGCTCCTCACTAATCCCTCCTTCCCTTCCTCTCCTCATCACTCAACCACACTTCCTTCTATAATCCACTCTTTTGGTCCTTTATAAAATGGGACTGTTGCATGAAAAATGTGCTAAGTTTCCCATCACTGCCTTCAGAACACATTTGTCTGTATGCCTAGAACAAATGTCCAAATGAAGGTTAATCTCTAAACTCTGTACTGAGAATGTAGCCTTGCATGTGGGATGTGGAAGCATAGGTGTGCATCAGGGTTCGCTATTTGGTCCTATGGCATTTTTCAGGTTTTATCACATAAATCGCAAAGTTCAGTGGGATTCTTGTTTTGTTTTTCAAATGATCCAATTTCGTCTTTGCTTTTATGATGCAGAGGTAACATTGCATGGATCCCCCCTCATTACTTTGACTGGAATGCCACACTTATCTCTTCTTAATCTCAAGTGAAAAGACAGATCTTAATGGAAGCAACTTACCCCATTTCTCTTTCCTCAG
Seq C2 exon
GGTCAAGTGACGCGAGCCCAGGAGGCAGAGGAGAACTACGTTATTAAGCGTGAATTGGCTGTGGTCCGGCAGCAGTGTCATACAGCCAGCGAGAGTCTGGAGAAAGCACAGGATACTATACGTGAACTTCAGCAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052766:ENSDART00000125037:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.177
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTACGTACAGAAAATAGATTACT
R:
TTGTGTTGCTGAAGTTCACGT
Band lengths:
194-1171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]